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| Transfers |
 Catanzaro < >  Sheffield Weds. |
| QTJ | < | Costantino FAVASULI | LW/LB | ITA | 49/50 | 94 | 26/04/04 (20) | 77 | | | Sheffield Weds. | | 870 | | | | 0 | 0 | 1015 | 0 | Y | (t.4, Catanzaro) |
 Auxerre < > Sheffield Weds. |
| DHW | < | Soumaïla COULIBALY | LB | FRA | 56/58 | 95 | 14/10/03 (21) | 77 | 1.90 | 82 | Sheffield Weds. | | 6290 | | | | 0 | 0 | 2030 | 0 | +1 | (t.10, Auxerre) |
| Wolves 7,000,000 < > Preston North End |
| GPU | > | Giacomo RASPADORI | St | ITA | 63 | 88 | 18/02/00 (25) | 87 | 1.72 | 69 | Preston North End | 6.79 | 12740 | | | | 1 | 0 | 4915 | 1 | +2 | |
 Crvena Zvezda 700,000 < > Port Vale |
| UIR | > | Savo RADANOVIC | Gk | SRB | 39 | 84 | 28/02/09 (16) | 89 | | | Port Vale | | 200 | | | | 0 | 0 | 165 | 0 | Y | |
| WQJ | > | Vasilije KOSTOV | AM/CM | SRB | 38 | 92 | 11/05/08 (16) | 87 | | | Port Vale | | 160 | | | | 0 | 0 | 230 | 0 | Y | |
 FC København 6,900,000 < > Carlisle United |
| XCI | > | Jonas Older WIND | St | DEN | 64 | 97 | 07/02/99 (26) | 87 | 1.86 | 76 | Carlisle United | | 16980 | | | | 0 | 0 | 5360 | 1 | +3 | |
 Maccabi Tel Aviv < > 2,180,000 Notts County |
| TIM | < | Omri GANDELMAN | AM | ISR | 60 | 13 | 16/05/00 (24) | 89 | 1.90 | 82 | Maccabi Tel Aviv | | | | | | | | 2880 | | | |
 Dumbarton < > 350,000 Southampton |
| FUY | < | Emil ROBACK | CS | SWE | 45 | 14 | 03/05/03 (21) | 82 | | | Dumbarton | | | | | | | | 500 | | | |
| Lorient < > 3,860,000 Exeter City |
| VXM | < | Lucas GOURNA-DOUATH | DM/CM | FRA | 62 | 0 | 05/08/03 (21) | 89 | 1.85 | 76 | Lorient | | | | | | | | 3610 | | | |
| 200,000 < > Bristol Rovers |
| ESS | > | Azeem ABDULAI | DM/CB | SCO | 47 | 98 | 09/12/02 (22) | 95 | | | Bristol Rovers | | 1060 | | | | 0 | 0 | 325 | 0 | | |
| 500,000 < > Bristol Rovers |
| QLI | > | Christian Chikwado NWACHUKWU | RW/AM | NGA | 49 | 98 | 27/12/05 (19) | 98 | 1.69 | 67 | Bristol Rovers | | 1500 | | | | 0 | 0 | 960 | 0 | | |
| 300,000 < > Cambridge United |
| NTP | > | Lucien MAHOVO | CB/LB | ENG | 47 | 84 | 07/06/05 (19) | 95 | | | Cambridge United | | 1080 | | | | 0 | 0 | 465 | 0 | | |
| 922,000 < > Cambridge United |
| XPQ | > | Brandon AGUILERA Zamora | AM | CRC | 54 | 97 | 23/06/03 (21) | 90 | 1.68 | 60 | Cambridge United | | 2740 | | | | 0 | 0 | 1660 | 0 | | |
| Loan/transfer listed |
| YBG | - | Simone PAFUNDI | AM | ITA | 46/51 | 95 | 14/03/06 (19) | 71 | 1.66 | 64 | Manchester City | | 2270 | | | T | 0 | 0 | 1285 | 0 | +1 | |
| Loan callbacks |
| THD | - | Roko SIMIC | CS | CRO | 59 | 97 | 10/09/03 (21) | 90 | | | Liverpool | 7.06 | 7700 | | | | 1 | 0 | 4020 | 12 | +1 | |
| LAM | - | Zach ABBOTT | CB | ENG | 37 | 91 | 13/05/06 (18) | 95 | | | Preston North End | | 140 | | | | 0 | 0 | 70 | 0 | Y | |
