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| Transfers |
 Strasbourg 2,300,000 < >  Port Vale |
| HNN | > | Moďse Dion SAHI | WS | MLI | 59 | 86 | 20/12/01 (22) | 88 | | | Port Vale | | 8660 | | | | 0 | 0 | 3640 | 0 | +2 | |
| CVZ | < | Henry David MOSQUERA Sánchez | LW | COL | 54/58 | 11 | 15/11/01 (22) | 73 | | | Strasbourg | | | | | | | | 2705 | | | |
 Villarreal 3,350,000 < > Port Vale |
| WHS | > | Filip JÖRGENSEN | Gk | DEN | 59 | 97 | 16/04/02 (22) | 87 | | | Port Vale | | 7690 | | | | 0 | 0 | 2385 | 0 | +2 | |
| NDT | < | PEDRO Eliezer Rodríguez Ledesma | W/WS | ESP | 64 | 1 | 28/07/87 (36) | 87 | 1.69 | 64 | Villarreal | | | | | | | | F/t | | | |
 FSV Mainz 05 < > 430,000 Preston North End |
| QVT | < | Patrick BAUER | CB | GER | 52 | 13 | 28/10/92 (31) | 92 | 1.92 | 84 | FSV Mainz 05 | | | | | | | | 315 | | | |
 St.Gallen 3,500,000 < > Preston North End |
| AEM | > | Leonidas STERGIOU | CB | SUI | 60 | 97 | 03/03/02 (22) | 85 | 1.80 | 70 | Preston North End | | 8300 | | | | 0 | 0 | 2460 | 0 | +1 | |
| 225,000 < > Preston North End |
| FZT | > | Mikey MOORE | LW | ENG | 39 | 93 | 11/08/07 (16) | 92 | | | Preston North End | | 190 | | | | 0 | 0 | 275 | 0 | Y | |
 Apollon < > Sheffield Weds. |
| WEO | < | Kristian ARNSTAD | CM | NOR | 55/58 | 95 | 07/09/03 (20) | 74 | 1.75 | 60 | Sheffield Weds. | | 4430 | | | | 2 | 0 | 3275 | 0 | | (t.25, Apollon) |
| West Ham United 26,000,000 < > Everton |
| RSW | > | Julián ÁLVAREZ | St | ARG | 68 | 43 | 31/01/00 (24) | 94 | 1.70 | 72 | Everton | 6.70 | 41940 | | | | 2 | 0 | 10640 | 4 | +2 | |
| Newcastle United 12,000,000 < > Everton |
| JKJ | > | Manuel AKANJI | CB/FB | SUI | 68 | 90 | 19/07/95 (28) | 92 | 1.87 | 85 | Everton | 6.67 | 37840 | | | | 2 | 0 | 4865 | 0 | +2 | |
 Hapoel Akko < > 680,000 Forest Green |
| DTH | < | James HILL | CB | ENG | 54 | 11 | 10/01/02 (22) | 84 | 1.84 | 73 | Hapoel Akko | | | | | | | | 1010 | | | |
 Airdrieonians < > 450,000 Forest Green |
| JLP | < | Kerr SMITH | CB | SCO | 48 | 10 | 12/12/04 (19) | 89 | | | Airdrieonians | | | | | | | | 545 | | | |
| 1,900,000 < > Forest Green |
| YES | > | James BEADLE | Gk | ENG | 54 | 97 | 16/06/04 (19) | 97 | | | Forest Green | | 1760 | | | | 0 | 0 | 1435 | 0 | Y | |
| St.Mirren 2,000,000 < > Wigan Athletic |
| GIT | > | Jamie McGRATH | W/AM | IRL | 57 | 93 | 30/09/96 (27) | 94 | 1.75 | 70 | Wigan Athletic | | 4750 | | | | 0 | 0 | 1535 | 0 | +4 | |
| Hibernian 320,000 < > Wigan Athletic |
| IVQ | > | Reuben McALLISTER | CM | SCO | 39 | 86 | 15/05/06 (18) | 96 | | | Wigan Athletic | | 180 | | | | 0 | 0 | 220 | 0 | Y | |
 Bologna < > 4,470,000 Hull City |
| KYG | < | Nicolas SEIWALD | CM | AUT | 62 | 2 | 04/05/01 (23) | 93 | | | Bologna | | | | | | | | 4340 | | | |
| Young Boys < > 3,340,000 Stoke City |
| TQG | < | Badredine BOUANANI | W/AM | ALG | 58 | 9 | 12/08/04 (19) | 90 | | | Young Boys | | | | | | | | 3560 | | | |
| Dijon < > 520,000 Stoke City |
| HHM | < | Mohamed EL AROUCH | CM | FRA | 46 | 1 | 06/04/04 (20) | 89 | 1.66 | 56 | Dijon | | | | | | | | 550 | | | |
 Slaven Belupo 2,100,000 < > Notts County |
| AAF | > | Lovro ZVONAREK | AM | CRO | 52 | 74 | 08/05/05 (19) | 89 | | | Notts County | | 2270 | | | | 0 | 0 | 1490 | 0 | +1 | |
| Dundee United < > 720,000 Notts County |
| XEP | < | Bailey WRIGHT | CB | AUS | 55 | 0 | 28/07/92 (31) | 94 | 1.85 | 79 | Dundee United | | | | | | | | 540 | | | |
| QPR < > 1,150,000 Exeter City |
| HWH | < | Luke CUNDLE | CM | ENG | 54 | 95 | 26/04/02 (22) | 86 | 1.83 | 68 | QPR | | 2970 | | | | 0 | 0 | 1500 | 0 | +1 | |
| Brora Rangers < > 1,390,000 Exeter City |
| RNC | < | Brooke NORTON-CUFFY | RWB | ENG | 55/56 | 14 | 12/01/04 (20) | 79 | | | Brora Rangers | | | | | | | | 1665 | | | |
| Ashton United < > 310,000 Exeter City |
| JPL | < | Miguel AZEEZ | CM/AM | ENG | 45 | 1 | 20/09/02 (21) | 88 | | | Ashton United | | | | | | | | 420 | | | |
| 300,000 < > Blackburn Rovers |
| MET | > | Tyler BINDON | CB | NZL | 48 | 91 | 27/01/05 (19) | 96 | | | Blackburn Rovers | | 1380 | | | | 0 | 0 | 545 | 0 | | |
| 57,000 < > Blackburn Rovers |
| BYE | > | Wesley OKODUWA | RB | ENG | 37 | 77 | 12/05/08 (16) | 92 | | | Blackburn Rovers | | 140 | | | | 0 | 0 | 100 | 0 | Y | |
| 250,000 < > Oxford United |
| FDE | < | RÚBEN da Rocha RODRIGUES | AM/LW | POR | 51 | 97 | 02/08/96 (27) | 92 | 1.78 | 68 | Oxford United | | 1220 | | | | 0 | 0 | 355 | 0 | | |
| Inter 2,825,000 < > Cheltenham Town |
| JIA | > | Ionut Andrei RADU | Gk | ROU | 61 | 96 | 28/05/97 (26) | 93 | 1.86 | 70 | Cheltenham Town | | 9480 | | | | 0 | 0 | 2245 | 0 | +1 | |
| Southport 915,000 < > Lincoln City |
| USE | > | Niall HUGGINS | FB | WAL | 53 | 92 | 18/12/00 (23) | 92 | | | Lincoln City | | 2560 | | | | 0 | 0 | 770 | 0 | +1 | |
| Loan/transfer listed |
| KLS | - | Petar STANIC | AM/LW | SRB | 55 | 95 | 14/08/01 (22) | 87 | | | Port Vale | | 1530 | | | T | 0 | 0 | 1740 | 0 | +1 | |
| MRE | - | Noah SADIKI | CB | BEL | 59 | 53 | 17/12/04 (19) | 89 | | | Port Vale | | 4140 | 24 | | T | 0 | 0 | 2795 | 0 | Y | |
| BGF | - | Rhian BREWSTER | St | ENG | 55 | 98 | 01/04/00 (24) | 93 | 1.75 | 75 | Wigan Athletic | | 3570 | | | T | 0 | 0 | 1590 | 1 | | |
| Released |
| YCI | 16 | Jamie JONES | Gk | ENG | 52 | 12 | 18/02/89 (35) | 94 | 1.90 | 90 | Middlesbrough | | | | | | | | 230 | | | |
