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| Transfers |
170,000 < >  Accrington Stan. |
| JKU | > | Matthew HENDERSON-HALL | RW | ENG | 37 | 97 | 08/12/06 (17) | 91 | | | Accrington Stan. | | 140 | | | | 0 | 0 | 170 | 0 | Y | |
| 75,000 < > Accrington Stan. |
| CMF | > | Matt YOUNG | Gk | ENG | 36 | 92 | 24/11/06 (17) | 90 | | | Accrington Stan. | | 120 | | | | 0 | 0 | 75 | 0 | Y | |
| 85,000 < > Accrington Stan. |
| EDY | > | Kiano DYER | DM | ENG | 37 | 81 | 21/11/06 (17) | 93 | | | Accrington Stan. | | 140 | | | | 0 | 0 | 85 | 0 | Y | |
 FC Groningen < > Sheffield Weds. |
| HVW | < | Tygo LAND | CM | NED | 49/52 | 89 | 11/01/06 (18) | 74 | | | Sheffield Weds. | | 730 | | | | 0 | 0 | 1620 | 0 | Y | (t.1, FC Groningen) |
 Gangwon 1,500,000 < > Sheffield Weds. |
| NPF | > | YANG Min-hyuk | LW | KOR | 49 | 89 | 16/04/06 (18) | 85 | 1.71 | 61 | Sheffield Weds. | | 820 | | | | 0 | 0 | 1045 | 0 | Y | |
 Bonnyrigg Rose < > 650,000 Forest Green |
| YQC | < | Ronnie EDWARDS | CB | ENG | 50 | 11 | 28/03/03 (21) | 83 | | | Bonnyrigg Rose | | | | | | | | 610 | | | |
 St. Patrick's < > Manchester City |
| FWY | > | Mason MELIA | CS | IRL | 37 | 89 | 01/10/07 (16) | 92 | | | Manchester City | | 150 | | | | 0 | 0 | 240 | 0 | Y | |
| TLZ | < | Noah MBAMBA | DM/CB | BEL | 50 | 12 | 05/01/05 (19) | 82 | 1.84 | 78 | St. Patrick's | | | | | | | | 745 | | | |
| 125,000 < > Tottenham Hotspur |
| QNF | > | Toby COLLYER | DM | ENG | 41 | 76 | 03/01/04 (20) | 96 | | | Tottenham Hotspur | | 490 | | | | 0 | 0 | 135 | 0 | +1 | |
 Náchod/Destné < > Preston North End |
| ISS | < | Radek VÍTEK | Gk | CZE | 46 | 94 | 24/10/03 (20) | 87 | 1.98 | 76 | Preston North End | | 530 | | | | 0 | 0 | 400 | 0 | Y | (t.12, Náchod/Destné) |
| Hull City < > 1,000,000 Stoke City |
| RRB | < | NEWERTON Martins da Silva | W | UKR | 46 | 95 | 03/06/05 (19) | 89 | 1.65 | 60 | Hull City | | 510 | | | | 0 | 0 | 610 | 0 | Y | |
 FC Nordsjćlland 1,100,000 < > Notts County |
| LYE | > | Sindre EGELI | CS | NOR | 40 | 78 | 21/06/06 (18) | 83 | | | Notts County | | 220 | | | | 0 | 0 | 315 | 0 | Y | |
 Athletic Bilbao 1,000,000 < > Notts County |
| KEX | > | Mikel JAUREGIZAR Albóniga | CM | ESP | 48 | 84 | 13/11/03 (20) | 93 | | | Notts County | | 640 | | | | 0 | 0 | 750 | 0 | Y | |
| Airdrieonians < > 250,000 Notts County |
| ZWB | < | Kyle CAMERON | CB/LB | SCO | 49 | 11 | 15/01/97 (27) | 92 | 1.90 | 76 | Airdrieonians | | | 2 | | | | | 265 | | | |
| 300,000 < > Bradford City |
| XJI | > | Warren O'HORA | CB | IRL | 52 | 92 | 19/04/99 (25) | 95 | 1.83 | 75 | Bradford City | | 2530 | | | | 0 | 0 | 535 | 0 | | |
| 220,000 < > Bradford City |
| NMY | > | Oscar WALLIN | CB | SWE | 49 | 84 | 09/07/01 (23) | 94 | | | Bradford City | | 1620 | | | | 0 | 0 | 400 | 0 | | |
| 455,000 < > Tranmere Rovers |
| IGG | > | Raphael BORGES RODRIGUES | St | AUS | 49 | 97 | 11/09/03 (21) | 90 | | | Tranmere Rovers | | 1390 | | | | 0 | 0 | 920 | 0 | +1 | |
| Loan/transfer listed |
| GMS | - | Bobby CLARK | CM | ENG | 49/52 | 91 | 07/02/05 (19) | 75 | | | Tottenham Hotspur | | 2450 | | | T | 0 | 0 | 1490 | 0 | +1 | |
| Loan callbacks |
| UVW | - | Amad DIALLO | RW | CIV | 61 | 95 | 11/07/02 (22) | 94 | 1.73 | 72 | Manchester United | 6.80 | 10720 | | | | 4 | 1 | 4180 | 5 | +4 | |
