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| Transfers |
 MK Dons 5,450,000 < > Port Vale |
| LZY | > | Davide FRATTESI | CM | ITA | 64 | 95 | 22/09/99 (24) | 88 | 1.78 | 74 | Port Vale | 7.16 | 18380 | | | | 6 | 1 | 5145 | 1 | +2 | |
| MRE | < | Noah SADIKI | CB | BEL | 59 | 38 | 17/12/04 (19) | 91 | | | MK Dons | | 6640 | 11 | | | 0 | 0 | 2795 | 0 | | |
| Manchester City 20,000,000 < > Brighton & HA |
| DNE | < | GONÇALO Matias RAMOS | CS | POR | 66 | 64 | 20/06/01 (23) | 88 | 1.84 | 77 | Manchester City | 6.91 | 27820 | | | | 0 | 0 | 9000 | 10 | +2 | |
| XTF | > | Matthijs DE LIGT | CB/CM | NED | 67 | 97 | 12/08/99 (25) | 89 | 1.88 | 89 | Brighton & HA | 6.90 | 32360 | | | | 3 | 0 | 5055 | 0 | +4 | |
| Monza < > 6,170,000 Manchester City |
| IUM | < | Randal KOLO-MUANI | St | FRA | 65 | 15 | 05/12/98 (25) | 86 | 1.87 | 73 | Monza | | | | | | | | 6565 | | | |
| 35,000 < > Southampton |
| MRO | > | Tommy SETFORD | Gk | ENG | 37 | 88 | 13/03/06 (18) | 87 | | | Southampton | | 150 | | | | 0 | 0 | 85 | 0 | Y | |
| 80,000 < > Southampton |
| EIZ | > | Nico O'REILLY | AM | ENG | 39 | 93 | 21/03/05 (19) | 95 | | | Southampton | | 200 | | | | 0 | 0 | 190 | 0 | Y | |
| 50,000 < > Southampton |
| IKB | > | Josh ACHEAMPONG | RB/CB | ENG | 39 | 85 | 05/05/06 (18) | 93 | | | Southampton | | 200 | | | | 0 | 0 | 120 | 0 | Y | |
| Nottingham Forest < > 2,080,000 Exeter City |
| LZI | < | Ebere 'Paul' ONUACHU | CS | NGA | 60 | 95 | 28/05/94 (30) | 93 | 2.01 | 84 | Nottingham Forest | | 9400 | | | | 2 | 0 | 2265 | 1 | +2 | |
| QPR < > 2,200,000 Exeter City |
| TAR | < | Jaidon ANTHONY | W | ENG | 58 | 91 | 01/12/99 (24) | 87 | | | QPR | | 5410 | | | | 0 | 0 | 2140 | 0 | +1 | |
| Verona 7,500,000 < > Exeter City |
| EHC | > | Ivan ILIC | CM/DM | SRB | 64 | 82 | 17/03/01 (23) | 85 | 1.82 | 73 | Exeter City | | 17680 | | | | 0 | 0 | 5790 | 0 | +3 | |
| 100,000 < > Preston North End |
| HJG | > | Will LANKSHEAR | CS | ENG | 39 | 95 | 20/04/05 (19) | 89 | | | Preston North End | | 190 | | | | 0 | 0 | 235 | 0 | Y | |
 Trabzonspor 3,500,000 < > Preston North End |
| GPW | > | UGURCAN Çakir | Gk | TUR | 64 | 87 | 05/04/96 (28) | 89 | 1.88 | 75 | Preston North End | | 15880 | | | | 0 | 0 | 2755 | 0 | +2 | |
| Standard 3,500,000 < > Preston North End |
| NQH | > | Cihan ÇANAK | AM/W | TUR | 55 | 74 | 24/01/05 (19) | 86 | 1.75 | 65 | Preston North End | | 2080 | | | | 0 | 0 | 2305 | 0 | Y | |
 Brora Rangers < > 1,080,000 Forest Green |
| NVP | < | Kortney HAUSE | CB/LB | ENG | 57 | 15 | 16/07/95 (29) | 92 | 1.89 | 84 | Brora Rangers | | | | | | | | 895 | | | |
 Bohemians < > 460,000 Wigan Athletic |
| OBG | < | Rocco VATA | AM | IRL | 46 | 1 | 18/04/05 (19) | 93 | | | Bohemians | | | | | | | | 610 | | | |
| Walsall 3,995,000 < > Crystal Palace |
| BNA | > | RODRIGO MUNIZ Carvalho | CS | BRA | 62 | 98 | 04/05/01 (23) | 92 | 1.84 | 71 | Crystal Palace | 6.30 | 12560 | | | | 1 | 0 | 5060 | 0 | +4 | |
| KOI | < | Takehiro TOMIYASU | FB/CB | JPN | 64 | 98 | 05/11/98 (25) | 93 | 1.85 | 70 | Walsall | 7.29 | 17480 | | | | 3 | 0 | 3305 | 0 | | |
 FC Liefering 675,000 < > Crystal Palace |
| GKS | > | Moussa Kounfolo YEO | CM | MLI | 45 | 83 | 01/06/04 (20) | 87 | | | Crystal Palace | | 450 | | | | 0 | 0 | 470 | 0 | Y | |
| Lyon 7,000,000 < > Leicester City |
| EDX | > | William Joel PACHO Tenorio | CB | ECU | 61/64 | 90 | 16/10/01 (22) | 76 | 1.86 | 81 | Leicester City | | 19280 | | | | 0 | 0 | 4355 | 0 | +2 | |
| MK Dons 10,500,000 < > Manchester United |
| FSJ | > | Alex MERET | Gk | ITA | 66 | 97 | 22/03/97 (27) | 89 | 1.90 | 77 | Manchester United | 6.92 | 26020 | | | | 1 | 0 | 4100 | 0 | +4 | |
| Stoke City 15,000,000 (+15,000,000) < > Colchester United |
| JPE | < | ENDRICK Felipe Moreira de Sousa | St | BRA | 61 | 99 | 21/07/06 (18) | 89 | 1.73 | 66 | Stoke City | 6.44 | 11020 | | | | 0 | 0 | 6910 | 1 | +3 | |
| OJN | < | Levi COLWILL | CB/LB | ENG | 63 | 96 | 26/02/03 (21) | 95 | 1.87 | 75 | Stoke City | 7.08 | 14340 | | | | 1 | 0 | 4165 | 1 | +3 | |
| PUT | < | Johan BAKAYOKO | RW | BEL | 65 | 92 | 20/04/03 (21) | 87 | 1.79 | 70 | Stoke City | 7.26 | 19700 | | | | 2 | 0 | 8175 | 2 | +3 | |
| VFV | > | Alejandro GARNACHO | W | ARG | 64 | 60 | 01/07/04 (20) | 92 | 1.80 | 80 | Colchester United | 6.83 | 17180 | 1 | | | 2 | 0 | 7750 | 2 | +4 | |
| WRI | > | Rasmus HØJLUND | CS | DEN | 65 | 98 | 04/02/03 (21) | 92 | 1.92 | 85 | Colchester United | 6.58 | 21100 | | | | 2 | 0 | 9560 | 1 | +4 | |
| Blackburn Rovers < > 4,460,000 Colchester United |
| VLF | < | James GARNER | CM | ENG | 63 | 90 | 13/03/01 (23) | 95 | | | Blackburn Rovers | | 14240 | | | | 2 | 0 | 5015 | 0 | +3 | |
| Paços Ferreira < > 3,930,000 Colchester United |
| HTA | < | LÁZARO Vinicius Marques | St | BRA | 59 | 1 | 12/03/02 (22) | 89 | 1.81 | 72 | Paços Ferreira | | | | | | | | 3640 | | | |
| Hull City < > 2,500,000 Arsenal |
| JMT | < | Sven BOTMAN | CB | NED | 64 | 95 | 12/01/00 (24) | 92 | 1.95 | 83 | Hull City | | 19280 | | | | 3 | 0 | 3490 | 0 | +3 | |
| RWI | > | Rafael Marín Zamora, RAFA | CB | ESP | 61 | 97 | 19/05/02 (22) | 88 | | | Arsenal | 6.62 | 10720 | | | | 1 | 0 | 2840 | 0 | +2 | |
| Monaco 4,250,000 < > Brighton & HA |
| VYG | < | Jack HARRISON | W | ENG | 63 | 6 | 20/11/96 (27) | 93 | 1.75 | 71 | Monaco | | | | | | | | 3745 | | | |
| UIF | > | Aleksandr GOLOVIN | AM/LW | RUS | 66 | 98 | 30/05/96 (28) | 90 | 1.80 | 69 | Brighton & HA | | 28020 | | | | 0 | 0 | 5415 | 1 | +4 | |
| JFT | < | ROBERTO FIRMINO Barbosa de Oliveira | CS | BRA | 63 | 2 | 02/10/91 (32) | 89 | 1.81 | 75 | Monaco | | | | | | | | 2525 | | | |
| Portsmouth < > 680,000 Brighton & HA |
| DSU | < | Demeaco DUHANEY | RB | ENG | 54 | 99 | 13/10/98 (25) | 91 | 1.80 | 70 | Portsmouth | 6.19 | 3000 | | | | 0 | 0 | 740 | 1 | +3 | |
| Loan/transfer listed |
| NYC | - | Francis AMUZU | W | BEL | 60 | 94 | 23/08/99 (24) | 90 | 1.70 | 65 | Sheffield Weds. | 6.55 | 6580 | | | T | 9 | 0 | 2880 | 9 | | |
| SPF | - | Álvaro Daniel RODRÍGUEZ Muñoz | CS | URU | 42/52 | 95 | 14/07/04 (20) | 61 | 1.92 | 81 | Manchester City | | 340 | | | T | 0 | 0 | 1590 | 0 | +1 | |
| AZD | - | Cameron ARCHER | CS | ENG | 60 | 77 | 09/12/01 (22) | 91 | 1.81 | 72 | Forest Green | 7.03 | 3530 | 2 | | T | 6 | 0 | 4215 | 7 | +2 | |
| ZXQ | - | Brodie SPENCER | CM | NIR | 49 | 95 | 06/05/04 (20) | 85 | | | Wigan Athletic | | 360 | | | T | 0 | 0 | 870 | 0 | Y | |
| TBI | - | Gabriel Osei MISEHOUY | St | NED | 47 | 94 | 18/07/05 (19) | 82 | | | Arsenal | | 620 | | | T | 0 | 0 | 835 | 0 | Y | |
| QYN | - | Matty CASH | RWB | POL | 65 | 97 | 07/08/97 (27) | 90 | 1.78 | 64 | Arsenal | 6.94 | 24100 | | | T | 2 | 1 | 3395 | 3 | +2 | |
| Released |
| CDI | <20 | Edinson Roberto CAVANI Gómez | CS | URU | 62 | 15 | 14/02/87 (37) | 81 | 1.84 | 71 | Boca Juniors | | | | | | | | F/t | | | |
| VTO | 16 | Chris LINES | CM | ENG | 36 | 0 | 30/11/85 (38) | 89 | 1.88 | 76 | Chorley | | | | | | | | F/t | | | |
| GPB | <25 | Képler Laveran Lima Ferreira, PEPE | CB/DM | POR | 65 | 2 | 26/02/83 (41) | 89 | 1.86 | 72 | (retired) | | | | | | | | F/t | | | |
| Loan callbacks |
| QTJ | - | Costantino FAVASULI | LW/LB | ITA | 37 | 92 | 26/04/04 (20) | 85 | | | Sheffield Weds. | | 150 | | | | 0 | 0 | 105 | 0 | Y | |
| ICF | - | Garang KUOL | CS/W | AUS | 49 | 92 | 15/09/04 (19) | 85 | 1.75 | 68 | Sheffield Weds. | | 840 | | | | 0 | 0 | 1120 | 0 | Y | |
