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| Transfers |
 Bayern München 16,250,000 < >  Ajax |
| KUP | > | Anthony ELANGA | W | SWE | 64 | 93 | 27/04/02 (23) | 82 | 1.78 | 65 | Ajax | | 17780 | | | | 0 | 0 | 5790 | 2 | +2 | |
 Sport Recife < > 2,620,000 Ajax |
| WLX | < | Roger IBAÑEZ da Silva | CB | BRA | 64 | 6 | 23/11/98 (26) | 88 | 1.85 | 73 | Sport Recife | | | | | | | | 3125 | | | |
 Partizan < > 1,980,000  Nice |
| TRD | < | Antoine MENDY | CB | SEN | 60 | 13 | 27/05/04 (21) | 95 | 1.87 | 75 | Partizan | | | | | | | | 2715 | | | |
 Dundee United 16,500,000 < > Nice |
| SRS | > | Malo GUSTO | RWB | FRA | 65 | 96 | 19/05/03 (22) | 92 | 1.79 | 76 | Nice | 7.30 | 23400 | | | | 0 | 0 | 5015 | 2 | +2 | |
| VfB Stuttgart 16,500,000 < > Nice |
| JYW | > | Serhou GUIRASSY | CS | GUI | 67 | 98 | 12/03/96 (29) | 94 | 1.87 | 82 | Nice | 6.83 | 31460 | | | | 3 | 1 | 6815 | 20 | +1 | |
| TQG | < | Badredine BOUANANI | W/AM | ALG | 61 | 94 | 12/08/04 (21) | 90 | | | VfB Stuttgart | 6.62 | 10220 | | | | 0 | 0 | 4615 | 0 | | |
 Al-Sadd < > 630,000  Torino |
| CKN | < | JUAN Guilherme Nunes Jesus | CB/LB | BRA | 63 | 15 | 10/06/91 (34) | 92 | 1.85 | 83 | Al-Sadd | | | | | | | | 620 | | | |
| Portuguesa-SP < > 3,680,000 Torino |
| EDA | < | ARTHUR Mendonça Cabral | CS | BRA | 62 | 0 | 25/04/98 (27) | 84 | 1.86 | 86 | Portuguesa-SP | | | | | | | | 3765 | | | |
 Real Sociedad < >  Boca Juniors |
| RVQ | < | Walter Daniel BENÍTEZ | Gk | ARG | 66 | 92 | 19/01/93 (32) | 95 | 1.91 | 86 | Real Sociedad | | 27320 | | | | 1 | 0 | 2900 | 0 | | |
| IPD | < | Nicolás Alejandro TAGLIAFICO | LWB | ARG | 66 | 98 | 31/08/92 (32) | 93 | 1.72 | 65 | Real Sociedad | 7.09 | 26820 | | | | 2 | 0 | 2300 | 8 | | |
| SGG | < | EMERSON Aparecido Leite de Souza Junior | RWB | BRA | 63 | 95 | 14/01/99 (26) | 82 | 1.81 | 79 | Real Sociedad | | 14340 | | | | 3 | 0 | 2705 | 0 | | |
| XAK | > | Mathías OLIVERA Miramontes | LB | URU | 66 | 96 | 31/10/97 (27) | 94 | 1.84 | 78 | Boca Juniors | 7.11 | 29420 | | | | 0 | 0 | 3910 | 2 | +1 | |
2,275,000 < >  Sporting Braga |
| DRN | > | Givairo READ | RB | NED | 61 | 76 | 02/06/06 (19) | 90 | | | Sporting Braga | | 5260 | | | | 0 | 0 | 3715 | 0 | Y | |
 Blackburn Rovers 6,000,000 < > Barcelona |
| XLI | > | David RAYA Martin | Gk | ESP | 68 | 64 | 15/09/95 (29) | 91 | 1.83 | 80 | Barcelona | | 44340 | | | | 0 | 0 | 4575 | 0 | +3 | |
| Ipswich Town < > 6,070,000 Barcelona |
| DWX | < | Rico LEWIS | RWB/DM | ENG | 65 | 10 | 21/11/04 (20) | 81 | 1.75 | 70 | Ipswich Town | | | | | | | | 6015 | | | |
 AA Gent < > 6,300,000 Barcelona |
| INR | < | Ikoma 'Loïs' OPENDA | CS | BEL | 65 | 13 | 16/02/00 (25) | 92 | 1.74 | 79 | AA Gent | | | | | | | | 6565 | | | |
| Antwerp 8,545,000 < > Marseille |
| FSL | > | George ILENIKHENA | CS | FRA | 61 | 96 | 16/08/06 (19) | 94 | 1.85 | 76 | Marseille | | 4890 | | | | 0 | 0 | 6395 | 0 | Y | |
| 2,245,000 < > Borussia Dortmund |
| DKY | > | Christos MOUZAKITIS | CM | GRE | 58 | 96 | 25/12/06 (18) | 90 | | | Borussia Dortmund | | 3670 | | | | 0 | 0 | 3850 | 0 | Y | |
 BATE < > Borussia Dortmund |
| HVB | < | Soungoutou MAGASSA | CB/DM | FRA | 59/62 | 99 | 08/10/03 (21) | 75 | 1.88 | 80 | Borussia Dortmund | | 12260 | | | | 0 | 0 | 3610 | 0 | +1 | (t.15, BATE) |
| ULQ | < | Myles LEWIS-SKELLY | CM/LB | ENG | 62 | 94 | 26/09/06 (18) | 90 | 1.78 | 72 | Borussia Dortmund | | 4900 | | | | 0 | 0 | 6830 | 0 | Y | (t.15, BATE) |
| 3,000,000 < > FC Porto |
| KOS | > | Charalambos KOSTOULAS | St | GRE | 58 | 97 | 30/05/07 (18) | 89 | 1.85 | 75 | FC Porto | | 5920 | | | | 0 | 0 | 4485 | 0 | | |
| 3,000,000 < > Lyon |
| SRL | > | Neil EL AYNAOUI | AM/LW | FRA | 62 | 82 | 02/07/01 (24) | 97 | 1.86 | 78 | Lyon | | 14460 | | | | 0 | 0 | 3855 | 0 | | |
| 2,500,000 < > Independiente |
| NAU | > | Calvin BASSEY Ughelumba | LB/CB | NGA | 64 | 95 | 31/12/99 (25) | 87 | 1.85 | 76 | Independiente | | 17180 | | | | 0 | 0 | 3305 | 0 | | |
| 2,300,000 < > Independiente |
| UAY | > | Rodrigo GARRO | AM | ARG | 62 | 92 | 04/01/98 (27) | 98 | 1.74 | 70 | Independiente | | 12660 | | | | 0 | 0 | 3235 | 1 | | |
| Loan/transfer listed |
| CVH | - | Gustavo Ribeiro Neves, GUSTAVINHO | CM/AM | BRA | 56 | 93 | 23/04/04 (21) | 91 | | | Sporting Braga | | 2700 | | | T | 0 | 0 | 2230 | 0 | Y | |
| ESI | - | SON Heung-min | LW/St | KOR | 67 | 93 | 08/07/92 (33) | 83 | 1.83 | 78 | Borussia Dortmund | | 43140 | | | T | 1 | 0 | 2820 | 0 | +1 | |
| SPF | - | Álvaro Daniel RODRÍGUEZ Muñoz | CS | URU | 52/55 | 94 | 14/07/04 (21) | 75 | 1.92 | 81 | Borussia Dortmund | | 2100 | | | T | 0 | 0 | 2240 | 0 | Y | |
| Loan callbacks |
| BXX | - | Rares ILIE | LW/AM | ROU | 56 | 92 | 19/04/03 (22) | 89 | 1.83 | 73 | Nice | 6.50 | 6980 | | | | 0 | 0 | 2015 | 0 | +3 | |
