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| Transfers |
 Walsall 5,200,000 < >  FC Basel |
| AMQ | > | Joey VEERMAN | DM | NED | 65 | 98 | 19/11/98 (25) | 87 | 1.85 | 75 | FC Basel | | 24100 | | | | 0 | 0 | 3815 | 0 | +2 | |
 Bayern München 7,000,000 < > FC Basel |
| JMU | > | Morgan GIBBS-WHITE | AM/W | ENG | 64 | 97 | 27/01/00 (24) | 89 | 1.78 | 60 | FC Basel | 6.68 | 18280 | | | | 8 | 1 | 5145 | 5 | +2 | |
 Napoli 5,500,000 < > FC Basel |
| JNA | > | Matteo POLITANO | W | ITA | 65 | 96 | 03/08/93 (30) | 90 | 1.69 | 67 | FC Basel | 6.75 | 22500 | | | | 5 | 0 | 4075 | 7 | +2 | |
 Aktobe < > 2,300,000  Rangers |
| CUQ | < | Borna BARISIC | LWB | CRO | 64 | 15 | 10/11/92 (31) | 91 | 1.86 | 82 | Aktobe | | | | | | | | 2215 | | | |
 Nacional 400,000 < > Rangers |
| LYA | > | Óscar Andrés PEREA Abonce | St | COL | 38 | 82 | 27/09/05 (18) | 83 | | | Rangers | | 180 | | | | 0 | 0 | 225 | 0 | Y | |
| FC Groningen 7,000,000 < > Rangers |
| TZZ | > | Alexander SŘRLOTH | CS | NOR | 64 | 79 | 05/12/95 (28) | 90 | 1.95 | 95 | Rangers | | 17780 | | | | 0 | 0 | 4730 | 1 | +2 | |
 Zrinjski < > SC Heerenveen |
| THD | < | Roko SIMIC | CS | CRO | 59 | 89 | 10/09/03 (20) | 93 | | | SC Heerenveen | | 3770 | | | | 0 | 0 | 4405 | 0 | Y | (t.7, Zrinjski) |
 Celta Vigo 7,000,000 < > SC Heerenveen |
| VSA | > | Jřrgen Strand LARSEN | CS | NOR | 63 | 99 | 06/02/00 (24) | 91 | 1.95 | 75 | SC Heerenveen | 6.74 | 16440 | | | | 1 | 0 | 5195 | 19 | +2 | |
WBA < >  IFK Göteborg |
| XWK | < | Désiré DOUÉ | CM | FRA | 59/61 | 98 | 03/06/05 (18) | 76 | 1.81 | 72 | IFK Göteborg | | 5840 | | | | 0 | 0 | 5920 | 0 | Y | (t.7, WBA) |
| 145,000 < > Lazio |
| ANV | > | Jayden DANNS | St | ENG | 40 | 88 | 16/01/06 (18) | 90 | | | Lazio | | 230 | | | | 0 | 0 | 315 | 0 | Y | |
| 75,000 < > Lazio |
| GMS | > | Bobby CLARK | CM | ENG | 38 | 71 | 07/02/05 (19) | 89 | | | Lazio | | 170 | | | | 0 | 0 | 155 | 0 | Y | |
| 90,000 < > Lazio |
| ULQ | > | Myles LEWIS-SKELLY | CM | ENG | 38 | 92 | 26/09/06 (17) | 90 | | | Lazio | | 170 | | | | 0 | 0 | 205 | 0 | Y | |
| Frosinone < > Arsenal |
| AWP | < | Cesare CASADEI | CM | ITA | 55 | 99 | 10/01/03 (21) | 85 | | | Arsenal | | 4330 | | | | 0 | 0 | 1925 | 0 | +5 | (t.38, Frosinone) |
| Schaffhausen < > Arsenal |
| HFE | < | Julio César ENCISO Espínola | W/WS | PAR | 61 | 92 | 23/01/04 (20) | 86 | | | Arsenal | | 5440 | | | | 0 | 0 | 5045 | 0 | Y | (t.7, Schaffhausen) |
| Bayern München 5,000,000 < > Aston Villa |
| GKF | > | Emiliano BUENDIA Stati | AM/RW | ARG | 63 | 87 | 25/12/96 (27) | 91 | 1.70 | 65 | Aston Villa | 7.06 | 12940 | | 1 | | 5 | 0 | 3745 | 1 | +4 | |
 Anderlecht < > SV Werder Bremen |
| INO | > | Amario COZIER-DUBERRY | LW/AM | ENG | 37 | 91 | 29/05/05 (18) | 89 | | | Anderlecht | | 150 | | | | 0 | 0 | 150 | 0 | Y | (t.7, SV Werder Bremen) |
| Birmingham City 4,750,000 < > SV Werder Bremen |
| MRW | > | Jordan JAMES | CM | WAL | 55 | 96 | 27/04/04 (19) | 87 | | | SV Werder Bremen | | 2030 | | | | 0 | 0 | 2305 | 0 | Y | |
| Manchester United 12,575,000 < > SV Werder Bremen |
| VFX | > | Willy KAMBWALA | CB | FRA | 53 | 96 | 25/08/04 (19) | 89 | | | SV Werder Bremen | | 1440 | | | | 0 | 0 | 1170 | 0 | Y | |
| VfL Osnabrück < > 840,000 Feyenoord |
| BIM | < | Gernot TRAUNER | CB/RB | AUT | 62 | 0 | 25/03/92 (32) | 92 | 1.83 | 82 | VfL Osnabrück | | | | | | | | 1265 | | | |
| Hibernian 350,000 < > Feyenoord |
| TSP | > | Josh LANDERS | CS | SCO | 38 | 69 | 27/02/07 (17) | 94 | | | Feyenoord | | 170 | | | | 0 | 0 | 255 | 0 | Y | |
| Angers < > 930,000 Zaragoza |
| CMD | < | Makhtar GUEYE | St | SEN | 54 | 15 | 04/12/97 (26) | 90 | 1.72 | 70 | Angers | | | | | | | | 1210 | | | |
| Ponferradina < > 1,140,000 Zaragoza |
| BIN | < | Alejandro FRANCÉS Torrijo | RB | ESP | 55 | 1 | 01/08/02 (21) | 89 | 1.80 | 72 | Ponferradina | | | | | | | | 1305 | | | |
Newcastle United 30,000,000 < >  Benfica |
| AWB | > | Anthony GORDON | W/WS | ENG | 64 | 99 | 24/02/01 (23) | 94 | 1.73 | 62 | Benfica | 5.86 | 16680 | | | | 5 | 1 | 5790 | 4 | +4 | |
| JNM | < | Nicolás GONZÁLEZ | LW/CS | ARG | 65 | 99 | 06/04/98 (26) | 85 | 1.80 | 67 | Newcastle United | 7.50 | 20200 | | | | 4 | 0 | 5315 | 6 | | |
| 100,000,000 < > Lille |
| KVM | > | PAU CUBARSÍ Paredes | CB | ESP | 56 | 94 | 22/01/07 (17) | 87 | | | Lille | | 2480 | | | | 0 | 0 | 2115 | 0 | Y | |
| 15,000,000 < > Lille |
| VET | > | HÉCTOR FORT García | RB | ESP | 54 | 86 | 02/08/06 (17) | 93 | | | Lille | | 1720 | | | | 0 | 0 | 1585 | 0 | Y | |
| Marseille < > 1,270,000 Lille |
| RAR | < | Rémy CABELLA | AM/W | FRA | 64 | 95 | 08/03/90 (34) | 94 | 1.71 | 62 | Marseille | 7.14 | 18980 | | | | 3 | 2 | 1100 | 6 | +3 | |
| Jong Genk 2,300,000 < > Anderlecht |
| PEE | > | Mika Marcel GODTS | St | BEL | 49 | 79 | 07/06/05 (18) | 88 | | | Anderlecht | | 840 | | | | 0 | 0 | 1220 | 0 | Y | |
| AZ 3,500,000 < > Anderlecht |
| XQN | > | Wouter GOES | CB | NED | 58 | 85 | 10/06/04 (19) | 87 | 1.84 | 75 | Anderlecht | | 3680 | | | | 0 | 0 | 2420 | 0 | Y | |
| Inker Zapresic 3,355,000 < > Sevilla |
| SMG | > | Ante BUDIMIR | CS | CRO | 63 | 96 | 22/07/91 (32) | 94 | 1.90 | 82 | Sevilla | | 13740 | | | | 0 | 0 | 2525 | 0 | +1 | |
| Loan/transfer listed |
| SAH | - | Patson DAKA | CS | ZAM | 58/59 | 96 | 09/10/98 (25) | 79 | 1.85 | 75 | Deportivo | | 9140 | | | T | 0 | 0 | 2730 | 0 | | |
| Loan callbacks |
| CHG | - | Youssoufa MOUKOKO | St/W | GER | 58/62 | 93 | 20/11/04 (19) | 74 | 1.75 | 74 | Deportivo | | 8700 | | | | 0 | 0 | 7385 | 0 | Y | |
| GEL | - | Elia CAPRILE | Gk | ITA | 58 | 94 | 25/08/01 (22) | 81 | | | SC Heerenveen | | 4100 | | | | 0 | 0 | 2070 | 0 | +1 | |
| WPM | - | Maarten VANDEVOORDT | Gk | BEL | 62 | 94 | 26/02/02 (22) | 84 | 1.87 | 71 | Paris SG | | 10720 | | | | 0 | 0 | 3645 | 0 | +3 | |
| EZM | - | Claudio Jeremias ECHEVERRI | AM | ARG | 46/52 | 95 | 02/01/06 (18) | 69 | 1.71 | 62 | SC Heerenveen | | 520 | | | | 0 | 0 | 1620 | 0 | Y | |
