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| Transfers |
 Leyton Orient 7,250,000 < > Blackburn Rovers |
| JMU | > | Morgan GIBBS-WHITE | AM | ENG | 65 | 95 | 27/01/00 (26) | 92 | 1.78 | 60 | Blackburn Rovers | 7.12 | 20000 | | | | 1 | 0 | 5315 | 3 | +2 | |
 Strasbourg < > 2,410,000 Blackburn Rovers |
| AVP | < | Illan MESLIER | Gk | FRA | 59 | 14 | 02/03/00 (26) | 94 | 1.96 | 74 | Strasbourg | | | | | | | | 1680 | | | |
| Angers 8,500,000 < > Wrexham |
| VZI | > | Jean-Mattéo BAHOYA | LW | FRA | 62 | 90 | 07/05/05 (21) | 88 | 1.80 | 75 | Wrexham | | 11960 | | | | 0 | 0 | 5325 | 0 | +4 | |
| Lille 10,000,000 < > Wrexham |
| QGN | > | Ayyoub BOUADDI | AM/CM | MAR | 62 | 85 | 02/10/07 (18) | 83 | 1.75 | 65 | Wrexham | | 11860 | | | | 0 | 0 | 6830 | 0 | +4 | |
 Yunnan Yukun < > 810,000 Accrington Stan. |
| ABN | < | Mutellip IMINQARI | CM | CHN | 49 | 3 | 18/03/04 (22) | 85 | 1.86 | 69 | Yunnan Yukun | | | | | | | | 700 | | | |
| Sunderland < > 340,000 Accrington Stan. |
| JBT | < | Joe LOW | CB | WAL | 49 | 94 | 20/02/02 (24) | 91 | | | Sunderland | 6.48 | 1370 | | | | 1 | 0 | 340 | 0 | +2 | |
| Lincoln City < > 70,000 Doncaster Rovers |
| LIQ | < | Jake TURNER | Gk | ENG | 45 | 95 | 25/02/99 (27) | 91 | 1.94 | 82 | Lincoln City | | 890 | | | | 0 | 0 | 125 | 0 | +1 | |
| 1,600,000 < > Doncaster Rovers |
| INN | > | Pelle Elkjaer MATTSSON | CM/AM | DEN | 58 | 93 | 04/08/01 (24) | 91 | | | Doncaster Rovers | | 5830 | | | | 0 | 0 | 2140 | 0 | +4 | |
 Bor.M'gladbach II 550,000 < > Port Vale |
| YFH | > | Tiago PEREIRA CARDOSO | Gk | LUX | 46 | 93 | 07/04/06 (20) | 89 | 1.91 | 87 | Port Vale | | 490 | | | | 0 | 0 | 400 | 0 | Y | |
| 2,000,000 < > Swindon Town |
| XJV | > | Max ALLEYNE | CB/DM | ENG | 55 | 82 | 27/08/05 (20) | 94 | | | Swindon Town | | 3630 | | | | 0 | 0 | 1435 | 0 | +1 | |
 Shamrock Rovers 3,200,000 < > Swindon Town |
| YNJ | > | Lewis KOUMAS | CS/AM | WAL | 55 | 98 | 19/09/05 (20) | 87 | | | Swindon Town | | 3330 | | | | 0 | 0 | 2460 | 0 | +1 | |
 Gil Vicente < > 910,000 Bury |
| LLV | < | LUÍS Hemir Silva SEMEDO | CS | POR | 53 | 15 | 11/08/03 (22) | 90 | | | Gil Vicente | | | 4 | | | | | 1505 | | | |
 PAOK 2,900,000 < > Bury |
| YFT | > | Stefanos TZIMAS | CS | GRE | 54 | 85 | 06/01/06 (20) | 92 | 1.84 | 77 | Bury | | 2960 | | | | 0 | 0 | 2130 | 0 | +1 | |
| Released |
| WNM | 16 | Aaron COLLINS | WS/RW | WAL | 46 | 8 | 27/05/97 (29) | 93 | 1.85 | 74 | Stockport County | | | | | | | | 240 | | | |
| YWF | 16 | Tom ANDERSON | CB | ENG | 44 | 1 | 02/09/93 (32) | 94 | 1.93 | 83 | Chesterfield | | | | | | | | F/t | | | |
| OOO | 16 | Jonathan TOMKINSON | CB | USA | 46 | 7 | 11/04/02 (24) | 95 | | | Cheltenham Town | | | | | | | | 190 | | | |
| VPZ | 25+ | Angus MacDONALD | CB | ENG | 39 | 15 | 15/10/92 (33) | 96 | 1.84 | 70 | AFC Telford | | | | | | | | F/t | | | |
