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| Transfers |
250,000 < >  Exeter City |
| QEL | > | Abdoullah BA | DM | FRA | 47 | 91 | 31/07/03 (19) | 89 | | | Exeter City | | 630 | | | | 0 | 0 | 465 | 0 | Y | |
| 330,000 < > Exeter City |
| GWY | > | Jewison Francisco BENNETTE Villegas | LW | CRC | 46 | 95 | 15/06/04 (18) | 89 | 1.75 | 68 | Exeter City | | 560 | | | | 0 | 0 | 670 | 0 | Y | |
| 200,000 < > Crystal Palace |
| LFB | < | John-Kymani GORDON | St | ENG | 37 | 87 | 13/02/03 (19) | 94 | | | Crystal Palace | | 300 | | | | 0 | 0 | 165 | 0 | | |
| 200,000 < > Crystal Palace |
| HDT | < | Jack WELLS-MORRISON | CM/AM | ENG | 38 | 90 | 18/02/04 (18) | 92 | | | Crystal Palace | | 350 | | | | 0 | 0 | 180 | 0 | | |
| 120,000 < > Crystal Palace |
| ZBL | < | Danny IMRAY | RB | ENG | 39 | 87 | 27/07/03 (19) | 95 | | | Crystal Palace | | 390 | | | | 0 | 0 | 100 | 0 | | |
| 300,000 < > Middlesbrough |
| SEI | < | Stephen WALKER | CS | ENG | 41 | 97 | 11/10/00 (22) | 88 | | | Middlesbrough | | 520 | | | | 0 | 0 | 220 | 0 | | |
| 700,000 < > Middlesbrough |
| OAK | < | Hayden HACKNEY | CM | SCO | 47 | 80 | 26/06/02 (20) | 92 | | | Middlesbrough | | 1100 | | | | 0 | 0 | 645 | 0 | | |
| 200,000 < > Middlesbrough |
| PPZ | < | Pharrell WILLIS | LW | ENG | 38 | 96 | 23/02/03 (19) | 95 | | | Middlesbrough | | 330 | | | | 0 | 0 | 155 | 0 | | |
| 240,000 < > Southampton |
| KIJ | < | Dominic BALLARD | CS | ENG | 37 | 97 | 01/04/05 (17) | 90 | | | Southampton | | 290 | | | | 0 | 0 | 215 | 0 | | |
| 400,000 < > Southampton |
| FBA | < | Dan N'LUNDULU | CS | ENG | 44 | 78 | 05/02/99 (23) | 92 | 1.80 | 75 | Southampton | | 800 | | | | 0 | 0 | 320 | 0 | | |
| 300,000 < > Southampton |
| XMB | < | Tyler DIBLING | W | ENG | 39 | 89 | 12/03/06 (16) | 90 | | | Southampton | | 370 | | | | 0 | 0 | 275 | 0 | | |
| 900,000 < > Millwall |
| WMM | < | Tyler BUREY | RW | ENG | 49 | 97 | 09/01/01 (21) | 90 | | | Millwall | | 1480 | | | | 0 | 0 | 785 | 0 | | |
| 500,000 < > Peterborough Utd |
| OCL | > | Joel RANDALL | LW | ENG | 47 | 96 | 29/10/99 (23) | 92 | 1.78 | 66 | Peterborough Utd | | 970 | | | | 0 | 0 | 445 | 0 | | |
| 500,000 < > Peterborough Utd |
| ZKB | > | Oliver NORBURN | CM/RM | GRN | 48 | 70 | 26/10/92 (30) | 94 | 1.85 | 82 | Peterborough Utd | | 1220 | | | | 0 | 0 | 265 | 0 | | |
| 220,000 < > Peterborough Utd |
| TTW | > | Dan BUTLER | LB | ENG | 48 | 95 | 26/08/94 (28) | 95 | 1.75 | 75 | Peterborough Utd | | 1210 | | | | 0 | 0 | 195 | 0 | | |
| Released |
| CCX | 25+ | Igor SHEVCHENKO | WS/RW | RUS | 41 | 2 | 02/02/85 (37) | 92 | 1.72 | 65 | Tulevik Viljandi | | | | | | | | F/t | | | |
| BYM | 16 | Ola TOIVONEN | CS/AM | SWE | 54 | 0 | 03/07/86 (36) | 92 | 1.92 | 72 | Brage | | | | | | | | F/t | | | |
