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| Transfers |
 Charlotte FC < > 1,730,000  Bristol City |
| YJD | < | Romaine MUNDLE | W | ENG | 56 | 12 | 24/04/03 (22) | 91 | 1.77 | 61 | Charlotte FC | | | | | | | | 2015 | | | |
| Burton Albion < > Bristol City |
| SMZ | < | James McCONNELL | CM | ENG | 50 | 96 | 13/09/04 (21) | 92 | | | Bristol City | | 1740 | | | | 0 | 0 | 915 | 0 | | (t.13, Burton Albion) |
| 160,000 < > Stoke City |
| WMU | > | Reggie WALSH | CM/DM | ENG | 36 | 72 | 20/10/08 (17) | 92 | | | Stoke City | | 130 | | | | 0 | 0 | 140 | 0 | Y | |
 Barcelona 700,000 < > Stoke City |
| LJQ | > | Pedro Fernández Sarmiento, DRO | CM | ESP | 43 | 90 | 12/01/08 (17) | 82 | | | Stoke City | | 350 | | | | 0 | 0 | 465 | 0 | Y | |
 Union SG 13,250,000 < > Stockport County |
| HNI | > | Kaoru MITOMA | LW | JPN | 66 | 92 | 20/05/97 (28) | 90 | 1.78 | 71 | Stockport County | | 26520 | | | | 0 | 0 | 5415 | 0 | +4 | |
| Manchester United 12,500,000 < > Stockport County |
| YDB | > | BRUNO Miguel Borges FERNANDES | CM/AM | POR | 68 | 82 | 08/09/94 (31) | 94 | 1.73 | 65 | Stockport County | 7.10 | 41240 | | | | 3 | 0 | 5800 | 1 | +2 | |
| Liverpool 5,250,000 < > Stockport County |
| DXY | > | Lionel Andrés MESSI | RW/St | ARG | 68 | 91 | 24/06/87 (38) | 93 | 1.69 | 67 | Stockport County | 5.88 | 40340 | | | | 1 | 0 | F/t | 0 | +1 | |
| Yeovil Town < > 50,000 Plymouth Argyle |
| AOQ | < | Ishé SAMUELS-SMITH | LB/CB | ENG | 38 | 14 | 05/06/06 (19) | 87 | | | Yeovil Town | | | | | | | | 75 | | | |
 Sparta Praha 250,000 < > Hull City |
| ENQ | > | Joeri Jesse HEERKENS | Gk | NED | 41 | 95 | 08/05/06 (19) | 91 | | | Hull City | | 240 | | | | 0 | 0 | 180 | 0 | Y | |
| Millwall < > 380,000 Hull City |
| TCT | < | Reece OXFORD | CB/DM | ENG | 51 | 93 | 16/12/98 (26) | 88 | 1.90 | 71 | Millwall | | 1990 | | | | 1 | 0 | 415 | 0 | +1 | |
| FC Porto B 5,000,000 < > Birmingham City |
| BSW | > | José DIOGO DALOT Teixeira | WB | POR | 65 | 90 | 18/03/99 (26) | 93 | 1.83 | 76 | Birmingham City | | 19600 | | | | 0 | 0 | 3605 | 0 | +2 | |
| Bradford City 11,500,000 < > Birmingham City |
| OIE | > | Rayan AÏT-NOURI | LWB | ALG | 65 | 96 | 06/06/01 (24) | 90 | 1.79 | 70 | Birmingham City | 7.36 | 21400 | | | | 3 | 0 | 4025 | 3 | +3 | |
| TCH | < | Juninho BACUNA | CM | CUW | 54 | 87 | 07/08/97 (28) | 88 | 1.78 | 74 | Bradford City | | 1910 | | | | 1 | 0 | 550 | 0 | | |
| RDU | > | Joachim ANDERSEN | CB | DEN | 65 | 96 | 31/05/96 (29) | 93 | 1.90 | 90 | Birmingham City | 6.93 | 21200 | | | | 2 | 1 | 2975 | 1 | +3 | |
| SFF | < | Jesper DALAND | CB | NOR | 52 | 99 | 06/01/00 (25) | 88 | 1.89 | 86 | Bradford City | 6.79 | 2300 | | | | 0 | 0 | 535 | 0 | | |
 Dubocica < > 690,000 Ipswich Town |
| ATS | < | Vanja VLAHOVIC | AM/LW | SRB | 51 | 0 | 23/03/04 (21) | 81 | | | Dubocica | | | | | | | | 1065 | | | |
| 600,000 < > Coventry City |
| MKD | > | Jesse JORONEN | Gk | FIN | 58 | 91 | 21/03/93 (32) | 87 | 1.97 | 89 | Coventry City | | 6930 | | | | 0 | 0 | 885 | 0 | | |
| 1,000,000 < > Coventry City |
| IYL | > | George CAMPBELL | CB | USA | 57 | 88 | 22/06/01 (24) | 94 | 1.88 | 79 | Coventry City | | 6000 | | | | 0 | 0 | 1250 | 0 | | |
| 900,000 < > Coventry City |
| AEG | > | RICARDO Luís Chaby MANGAS | LB | POR | 59 | 97 | 19/03/98 (27) | 89 | 1.79 | 66 | Coventry City | | 8080 | | | | 0 | 0 | 1410 | 0 | | |
| 500,000 < > Luton Town |
| IOH | > | Adilson MALANDA | CB | FRA | 54 | 97 | 29/10/01 (24) | 90 | 1.91 | 75 | Luton Town | | 3000 | | | | 0 | 0 | 785 | 0 | | |
| 350,000 < > Luton Town |
| UTT | > | Enes MAHMUTOVIC | CB/DM | LUX | 54 | 92 | 22/05/97 (28) | 91 | 1.90 | 85 | Luton Town | | 2830 | | | | 0 | 0 | 595 | 0 | | |
| 1,100,000 < > Luton Town |
| AUI | > | Mattias KÄIT | W/AM | EST | 58 | 91 | 29/06/98 (27) | 84 | 1.83 | 75 | Luton Town | | 5960 | | | | 0 | 0 | 1785 | 0 | | |
| 2,500,000 < > MK Dons |
| LDV | > | Zidane IQBAL | CM/AM | IRQ | 60 | 72 | 27/04/03 (22) | 84 | 1.81 | 71 | MK Dons | | 8660 | | | | 0 | 0 | 3620 | 0 | | |
| 800,000 < > MK Dons |
| INN | > | Pelle Elkjaer MATTSSON | CM/AM | DEN | 55 | 97 | 04/08/01 (24) | 91 | | | MK Dons | | 3570 | | | | 0 | 0 | 1365 | 0 | | |
| 3,500,000 < > Newcastle United |
| FEU | > | PEDRO António Pereira GONÇALVES | W/AM | POR | 64 | 95 | 28/06/98 (27) | 90 | 1.73 | 65 | Newcastle United | | 17980 | | | | 0 | 0 | 4330 | 0 | | |
| 2,500,000 < > Newcastle United |
| ZLM | > | Javairô Joreno Faustino DILROSUN | W/AM | NED | 63 | 96 | 22/06/98 (27) | 87 | 1.75 | 67 | Newcastle United | | 14640 | | | | 0 | 0 | 3745 | 0 | | |
| 675,000 < > Bury |
| SFU | > | Richard KONE | CS | ENG | 52 | 72 | 15/07/02 (23) | 95 | | | Bury | | 2540 | | | | 0 | 0 | 1150 | 0 | | |
| Vitesse 2,975,000 < > Derby County |
| PWP | > | Million MANHOEF | W | NED | 58 | 92 | 03/01/02 (23) | 92 | 1.79 | 71 | Derby County | | 5720 | | | | 0 | 0 | 2420 | 0 | +1 | |
| Charlotte FC 2,770,000 < > Sheffield United |
| SAM | > | Patrick AGYEMANG | St | USA | 57 | 93 | 07/11/00 (24) | 95 | 1.93 | 82 | Sheffield United | | 4660 | | | | 0 | 0 | 2150 | 0 | +1 | |
 WellingtonPhoenix 1,960,000 < > WBA |
| FNI | > | Liberato CACACE | LB/LM | NZL | 59 | 87 | 27/09/00 (25) | 91 | 1.81 | 66 | WBA | | 6680 | | | | 0 | 0 | 1595 | 0 | +1 | |
| Released |
| WTY | 16 | Cyrus CHRISTIE | RB | IRL | 52 | 12 | 30/09/92 (33) | 93 | 1.85 | 77 | Cakovec | | | | | | | | 115 | | | |
| BLD | 16 | Jamie PATERSON | W/WS | ENG | 48 | 7 | 20/12/91 (33) | 94 | 1.75 | 66 | Airdrieonians | | | | | | | | 70 | | | |
| Loan callbacks |
| SEO | - | Taylor HARWOOD-BELLIS | CB | ENG | 62 | 30 | 30/01/02 (23) | 86 | 1.86 | 82 | Plymouth Argyle | 6.79 | 12460 | 3 | | | 0 | 0 | 2950 | 0 | +1 | |
| XMD | - | Jobe BELLINGHAM | CM/AM | ENG | 61 | 94 | 23/09/05 (20) | 92 | 1.87 | 73 | Ipswich Town | | 5430 | | | | 1 | 0 | 5045 | 1 | Y | |
| XDR | - | Dean HUIJSEN | CB | ESP | 64 | 99 | 14/04/05 (20) | 90 | 1.95 | 84 | Ipswich Town | 6.86 | 6970 | | | | 0 | 0 | 5230 | 0 | Y | |
| MUN | - | Abdoulaye KAMARA | DM/CM | GUI | 49/50 | 94 | 06/11/04 (20) | 78 | 1.82 | 77 | Plymouth Argyle | | 970 | | | | 0 | 0 | 675 | 0 | Y | |
| AVP | - | Illan MESLIER | Gk | FRA | 62 | 94 | 02/03/00 (25) | 91 | 1.96 | 74 | Leeds United | | 12060 | | | | 3 | 0 | 2850 | 0 | | |
