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| Transfers |
 Morecambe < > 30,000,000 Exeter City | Tribunal [A] |
| XXO | < | JOÃO Pedro Gonçalves NEVES | AM/CM | POR | 67 | 96 | 27/09/04 (21) | 90 | 1.74 | 66 | Exeter City | 7.05 | 32960 | | | | 7 | 0 | 10845 | 4 | +1 | |
| UCV | > | Tomás SUSLOV | AM/RW | SVK | 63 | 90 | 07/06/02 (23) | 91 | 1.75 | 65 | Morecambe | 6.55 | 15740 | | | | 2 | 0 | 5015 | 3 | +2 | |
| TOR | < | Rayan CHERKI | AM/RW | FRA | 64 | 88 | 17/08/03 (22) | 93 | 1.76 | 70 | Exeter City | 6.89 | 19080 | | | | 5 | 0 | 6440 | 5 | +1 | |
| 175,000 < > Blackpool |
| NDR | > | Chizaram EZENWATA | CS | ENG | 36 | 90 | 05/09/08 (17) | 93 | | | Blackpool | | 130 | | | | 0 | 0 | 180 | 0 | Y | |
| Bristol City 4,050,000 < > Everton |
| IWT | > | Pascal LORETZ | Gk | SUI | 59 | 94 | 01/06/03 (22) | 83 | 1.88 | 80 | Everton | | 7150 | | | | 0 | 0 | 2385 | 0 | +2 | |
| Doncaster Rovers 5,050,000 < > Everton |
| JOJ | > | AFONSO Bastardo MOREIRA | W | POR | 52 | 94 | 19/03/05 (20) | 88 | 1.76 | 70 | Everton | | 2730 | | | | 0 | 0 | 1365 | 0 | +2 | |
| CXV | > | Jovan MILOSEVIC | CS | SRB | 51 | 98 | 31/07/05 (20) | 90 | 1.90 | 77 | Everton | 6.29 | 2110 | | | | 0 | 0 | 1370 | 0 | +2 | |
| Accrington Stan. 3,050,000 < > Everton |
| FYV | > | Kjell WÄTJEN | CM | GER | 46 | 99 | 16/02/06 (19) | 87 | 1.84 | 72 | Everton | | 1080 | | | | 0 | 0 | 610 | 0 | +2 | |
| FSV Mainz 05 2,500,000 < > Nottingham Forest |
| SNM | > | Ridle BAKU | RWB/CM | GER | 64 | 86 | 08/04/98 (27) | 84 | 1.76 | 68 | Nottingham Forest | | 16680 | | | | 0 | 0 | 2940 | 0 | +4 | |
| SGG | < | EMERSON Aparecido Leite de Souza Junior | RWB | BRA | 62 | 6 | 14/01/99 (26) | 85 | 1.81 | 79 | FSV Mainz 05 | | | | | | | | 2340 | | | |
 PSV 10,000,000 < > Cardiff City |
| CHR | > | Brian BROBBEY | CS | NED | 64 | 93 | 02/02/02 (23) | 86 | 1.80 | 72 | Cardiff City | | 18880 | | | | 0 | 0 | 6755 | 4 | +4 | |
| MOS | < | FÁBIO Daniel Soares SILVA | CS | POR | 62 | 15 | 19/07/02 (23) | 94 | 1.85 | 75 | PSV | | | | | | | | 5060 | | | |
 Las Palmas < > 2,390,000 Port Vale |
| ELO | < | PAU LÓPEZ Sabata | Gk | ESP | 63 | 15 | 13/12/94 (30) | 90 | 1.90 | 86 | Las Palmas | | | | | | | | 2135 | | | |
 Independiente < > 2,460,000 Swindon Town |
| HWT | < | Jeremy Leonel SARMIENTO Morante | RW | ECU | 60 | 0 | 20/06/02 (23) | 80 | 1.83 | 73 | Independiente | | | | | | | | 3245 | | | |
| 700,000 < > Wigan Athletic |
| QPB | > | Daniel BENNIE | W | AUS | 47 | 81 | 13/04/06 (19) | 84 | | | Wigan Athletic | | 530 | | | | 0 | 0 | 710 | 0 | Y | |
 Celtic B < > 1,010,000 Wigan Athletic |
| KBK | < | Callum LANG | St | ENG | 54 | 0 | 08/09/98 (27) | 94 | 1.80 | 70 | Celtic B | | | | | | | | 1130 | | | |
 Panathinaikos 7,600,000 < > Preston North End |
| NWT | > | KAIO Jorge Pinto Ramos | St | BRA | 62 | 82 | 24/01/02 (23) | 83 | 1.76 | 64 | Preston North End | | 12160 | | | | 0 | 0 | 5060 | 0 | +3 | |
| SC Freiburg < > 2,580,000 QPR |
| KTL | < | Armindo SIEB | St | GER | 58/59 | 13 | 17/02/03 (22) | 78 | 1.80 | 75 | SC Freiburg | | | | | | | | 3640 | | | |
| 430,000 < > Mansfield Town |
| GON | > | Tyreece CAMPBELL | LW | JAM | 50 | 87 | 14/09/03 (22) | 94 | | | Mansfield Town | | 1800 | | | | 0 | 0 | 820 | 0 | | |
| Rennes 3,995,000 < > Brighton & HA |
| KUI | > | David BROOKS | RW/AM | WAL | 62 | 81 | 08/07/97 (28) | 93 | 1.66 | 62 | Brighton & HA | | 10760 | | | | 0 | 0 | 3030 | 0 | +1 | |
| Loan/transfer listed |
| GTQ | - | Maxi OYEDELE | DM | POL | 54 | 52 | 07/11/04 (21) | 81 | 1.80 | 69 | Wolves | | 2180 | 27 | | T | 0 | 0 | 1125 | 0 | +1 | |
| CUG | - | Sonny COX | CS | ENG | 43 | 95 | 11/10/04 (21) | 91 | | | Swindon Town | | 340 | | | T | 0 | 0 | 360 | 0 | Y | |
| Released |
| XUZ | 25+ | Robin MIRISOLA | CS | BEL | 46 | 7 | 08/12/06 (19) | 84 | 1.82 | 64 | Racing Genk | | | | | | | | 720 | | | |
| UVY | 25+ | Joe BENNETT | LWB | ENG | 51 | 1 | 28/03/90 (35) | 90 | 1.77 | 65 | Grimsby Town | | | | | | | | F/t | | | |
| HCM | 16 | Karim BENZEMA | CS | FRA | 65 | 2 | 19/12/87 (37) | 91 | 1.83 | 73 | Al-Ittihad | | | | | | | | F/t | | | |
| XFV | 16 | Max THOMPSON | Gk | ENG | 44 | 2 | 01/08/04 (21) | 87 | | | Chesterfield | | | | | | | | 260 | | | |
| Loan callbacks |
| KEP | - | JOÃO Pedro Arnauth Barrocas SIMÕES | DM/CM | POR | 54 | 97 | 06/01/07 (18) | 89 | 1.75 | 71 | Wrexham | 6.92 | 1880 | | | | 2 | 0 | 1470 | 1 | Y | |
| TDS | - | Sávio Moreira de Oliveira, SAVINHO | W | BRA | 64 | 97 | 10/04/04 (21) | 93 | 1.79 | 66 | Liverpool | 6.94 | 19780 | | | | 3 | 0 | 7090 | 4 | +1 | |
| LFW | - | MARC BERNAL Casas | CM | ESP | 53 | 96 | 26/05/07 (18) | 91 | 1.91 | 84 | Wrexham | 6.41 | 1700 | | | | 2 | 0 | 1870 | 0 | Y | |
