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| Transfers |
 Clyde < >  Tottenham Hotspur |
| ANV | < | Jayden DANNS | St | ENG | 48 | 92 | 16/01/06 (19) | 92 | | | Tottenham Hotspur | | 710 | | | | 0 | 0 | 965 | 0 | Y | (t.39, Clyde) |
| 335,000 < > Stevenage |
| MST | > | Ryan KAVUMA-McQUEEN | W/AM | ENG | 37 | 84 | 01/01/09 (16) | 93 | | | Stevenage | | 140 | | | | 0 | 0 | 195 | 0 | Y | |
 Preston Lions < > 70,000 Stevenage |
| EDY | < | Kiano DYER | DM | ENG | 37 | 12 | 21/11/06 (18) | 88 | | | Preston Lions | | | | | | | | 70 | | | |
 Viking < > 2,650,000 FC Halifax Town |
| BBD | < | Leo Skiri ØSTIGÅRD | CB | NOR | 63 | 5 | 04/11/99 (26) | 83 | 1.82 | 80 | Viking | | | | | | | | 2705 | | | |
 Maccabi Tel Aviv < > Everton |
| ZXO | < | Eran ZEHAVI | CS/AM | ISR | 60 | 2 | 25/07/87 (38) | 89 | 1.82 | 72 | Maccabi Tel Aviv | | | | | | | | F/t | | | |
| Dagenham & Redbr. < > Everton |
| PJV | < | Stanley MILLS | AM | ENG | 48 | 13 | 25/10/03 (22) | 88 | 1.80 | 70 | Dagenham & Redbr. | | | | | | | | 600 | | | |
 Bahia < > 1,190,000 Millwall |
| ZOL | < | WILLIAN José da Silva | CS | BRA | 57/60 | 15 | 23/11/91 (33) | 75 | 1.87 | 81 | Bahia | | | | | | | | 1125 | | | |
 Verona 1,300,000 < > Blackpool |
| JPR | > | GIOVANE Santana do Nascimento | St | BRA | 49 | 86 | 24/11/03 (21) | 91 | 1.84 | 83 | Blackpool | | 1560 | | | | 0 | 0 | 920 | 0 | | |
 Millonarios 750,000 < > Blackpool |
| LHS | > | Néiser David VILLARREAL Quiñónes | RW | COL | 46 | 99 | 24/04/05 (20) | 88 | | | Blackpool | | 590 | | | | 0 | 0 | 550 | 0 | Y | |
| 500,000 < > Luton Town |
| FCT | > | Macaulay LANGSTAFF | St | ENG | 52 | 91 | 03/02/97 (28) | 93 | 1.75 | 77 | Luton Town | | 2600 | | | | 0 | 0 | 765 | 0 | | |
| Released |
| DSU | 16 | Demeaco DUHANEY | RB | ENG | 54 | 2 | 13/10/98 (27) | 93 | 1.80 | 70 | Istanbulspor | | | | | | | | 645 | | | |
| GZS | 25+ | Finley McALLISTER | DM | ENG | 37 | 2 | 16/07/06 (19) | 89 | | | Runcorn | | | | | | | | 55 | | | |
| LHD | 16 | James SCANLON | AM/CM | GIB | 39 | 0 | 28/09/06 (19) | 91 | | | Enfield | | | | | | | | 190 | | | |
| AMW | 16 | Samuele VIGNATO | St | ITA | 54 | 15 | 24/02/04 (21) | 81 | | | Lodigiani | | | | | | | | 1935 | | | |
| Loan callbacks |
| BSH | - | Thomas KRISTENSEN | CB | DEN | 61 | 79 | 17/01/02 (23) | 91 | 1.98 | 85 | FC Halifax Town | 6.67 | 8400 | | | | 4 | 0 | 2555 | 0 | +4 | |
| EIG | <10 | Yankuba MINTEH | RW | GAM | 63 | 94 | 22/07/04 (21) | 90 | 1.80 | 65 | Crystal Palace | 6.50 | 12060 | | | | 0 | 0 | 6145 | 0 | +3 | |
