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| Transfers |
 Wigan Athletic 14,500,000 < > Norwich City |
| PQR | > | Oscar BOBB | W/AM | NOR | 59 | 94 | 12/07/03 (21) | 92 | | | Norwich City | 7.05 | 7700 | | | | 0 | 0 | 3455 | 11 | +2 | |
| Manchester City < > 1,330,000 Hull City |
| XGF | < | Christian GÜNTER | LB | GER | 64 | 92 | 28/02/93 (32) | 89 | 1.84 | 81 | Manchester City | 7.43 | 17780 | | | | 3 | 0 | 1715 | 0 | +2 | |
 IMT < > 900,000 Hull City |
| OSG | < | Marko LAZETIC | CS | SRB | 48 | 0 | 22/01/04 (21) | 82 | 1.90 | 80 | IMT | | | | | | | | 790 | | | |
 Napoli < > Tottenham Hotspur |
| PKS | < | Ben DOAK | RW | SCO | 58 | 95 | 11/11/05 (19) | 90 | | | Tottenham Hotspur | 6.94 | 3330 | | | | 1 | 0 | 3560 | 1 | Y | (t.3, Napoli) |
| Parma < > 800,000 Morecambe |
| HHK | < | Joshua RAWLINS | RB | AUS | 52 | 12 | 23/04/04 (21) | 85 | | | Parma | | | | | | | | 830 | | | |
| Hibernian < > 1,690,000 Northampton Town |
| JAK | < | Riley McGREE | AM | AUS | 56 | 10 | 02/11/98 (26) | 85 | 1.78 | 73 | Hibernian | | | | | | | | 1410 | | | |
| Northampton Town < > 850,000 Tranmere Rovers |
| VTY | < | Michael GOLDING | CM | ENG | 40 | 93 | 23/05/06 (18) | 87 | | | Northampton Town | | 220 | | | | 0 | 0 | 260 | 0 | Y | |
| Ipswich Town 2,800,000 < > Northampton Town |
| KCN | > | Nathan BROADHEAD | St | WAL | 58 | 98 | 05/04/98 (27) | 94 | | | Northampton Town | 6.67 | 6650 | | | | 2 | 0 | 2080 | 7 | +4 | |
| Celtic 3,600,000 < > Stevenage |
| LAQ | > | Liam SCALES | CB/LB | IRL | 62 | 96 | 08/08/98 (26) | 86 | 1.87 | 82 | Stevenage | | 12060 | | | | 0 | 0 | 2340 | 0 | +4 | |
 AZ 1,200,000 < > FC Halifax Town |
| GKE | > | David WOLFE | LB | NOR | 63 | 93 | 23/04/02 (23) | 87 | 1.85 | 78 | FC Halifax Town | | 15340 | | | | 0 | 0 | 3405 | 0 | +4 | |
| UYT | < | Mohammed DARAMY | RW/St | DEN | 62 | 10 | 07/01/02 (23) | 88 | 1.80 | 71 | AZ | | | | | | | | 4340 | | | |
| Jahn Regensburg 5,135,000 < > Wrexham |
| MGA | > | Angelo STILLER | DM | GER | 64 | 68 | 04/04/01 (24) | 88 | 1.83 | 73 | Wrexham | | 17480 | | | | 0 | 0 | 3490 | 0 | +4 | |
| Alcione < > 360,000 Wrexham |
| PAW | < | Mattia MANNINI | CM | ITA | 43 | 14 | 08/07/06 (18) | 85 | | | Alcione | | | | | | | | 425 | | | |
 Novorizontino < > 1,230,000 Liverpool |
| TIO | < | MATHEUS NASCIMENTO de Paula | CS | BRA | 52 | 1 | 03/03/04 (21) | 82 | 1.85 | 71 | Novorizontino | | | | | | | | 1440 | | | |
 Konyaspor < > 1,050,000 Nottingham Forest |
| MYI | < | Yusuf BARASI | CS/LW | TUR | 51/53 | 15 | 31/03/03 (22) | 76 | 1.82 | 66 | Konyaspor | | | | | | | | 1505 | | | |
| Bradford City < > 2,500,000 Tranmere Rovers |
| EAG | < | Leon KING | CB | SCO | 54 | 96 | 14/01/04 (21) | 93 | | | Bradford City | 6.50 | 2730 | | | | 3 | 0 | 1125 | 1 | +4 | |
 Lyon < > 1,450,000 Cardiff City |
| TJZ | < | Cédric KIPRÉ | CB | CIV | 60 | 1 | 09/12/96 (28) | 92 | 1.90 | 96 | Lyon | | | | | | | | 1530 | | | |
 Celta Vigo 9,000,000 < > Cardiff City |
| DOM | > | HUGO ÁLVAREZ Antúnez | W | ESP | 61 | 93 | 02/07/03 (21) | 92 | 1.76 | 72 | Cardiff City | | 9440 | | | | 0 | 0 | 4615 | 0 | +4 | |
| SXV | > | Javier Rodríguez Galiano, JAVI RODRÍGUEZ | RB/CB | ESP | 58 | 93 | 26/06/03 (21) | 91 | 1.78 | 70 | Cardiff City | | 5950 | | | | 0 | 0 | 2030 | 0 | +4 | |
| Dunfermline 375,000 < > Cheltenham Town |
| NJI | > | Taylor SUTHERLAND | RW | SCO | 41 | 81 | 12/12/05 (19) | 91 | | | Cheltenham Town | | 230 | | | | 0 | 0 | 275 | 0 | Y | |
| Chelsea 2,300,000 < > Preston North End |
| IME | > | Íñigo MARTÍNEZ Berridi | CB | ESP | 65 | 97 | 17/05/91 (33) | 88 | 1.81 | 62 | Preston North End | 6.98 | 21500 | | | | 6 | 0 | 1420 | 2 | +2 | |
 Vélez Sársfield 750,000 < > Preston North End |
| EZF | > | Alejo Uriel SARCO | St | ARG | 43 | 86 | 06/01/06 (19) | 90 | 1.79 | 76 | Preston North End | | 320 | | | | 0 | 0 | 455 | 0 | Y | |
| Shrewsbury Town < > 40,000,000 Bolton Wanderers |
| UYA | < | Evan FERGUSON | CS | IRL | 62 | 90 | 19/10/04 (20) | 93 | | | Shrewsbury Town | 6.17 | 12860 | | | | 2 | 0 | 6795 | 2 | +4 | |
| Leeds United 40,000,000 < > Bolton Wanderers |
| JKS | > | Ethan NWANERI | AM/RW | ENG | 61 | 98 | 21/03/07 (18) | 86 | | | Bolton Wanderers | | 5160 | | | | 0 | 0 | 5920 | 0 | Y | |
| Fulham 14,000,000 < > Leicester City |
| BNA | > | RODRIGO MUNIZ Carvalho | CS | BRA | 62 | 99 | 04/05/01 (23) | 89 | 1.84 | 71 | Leicester City | 6.56 | 12260 | | | | 9 | 0 | 5060 | 4 | +1 | |
| Accrington Stan. 14,000,000 < > Leicester City |
| GEA | > | GABRIEL Fernando de JESUS | St | BRA | 65 | 95 | 03/04/97 (28) | 93 | 1.78 | 73 | Leicester City | 6.54 | 22100 | | | | 1 | 0 | 5465 | 13 | +1 | |
| 800,000 < > Bristol City |
| SFF | > | Jesper DALAND | CB | NOR | 57 | 74 | 06/01/00 (25) | 89 | 1.89 | 86 | Bristol City | | 5010 | | | | 0 | 0 | 1180 | 0 | +1 | |
| 733,000 < > Bristol City |
| HPO | > | Torbjørn Lysaker HEGGEM | CB | NOR | 57 | 95 | 12/01/99 (26) | 93 | | | Bristol City | | 5160 | | | | 0 | 0 | 1110 | 0 | +1 | |
| Loan/transfer listed |
| RIJ | - | Alfie JONES | CB | ENG | 58 | 93 | 07/10/97 (27) | 94 | 1.91 | 70 | Stevenage | | 6370 | | | T | 0 | 0 | 1210 | 0 | +3 | |
| RIE | - | Ross SYKES | CB | ENG | 60 | 91 | 26/03/99 (26) | 95 | 1.96 | 73 | Stevenage | | 5740 | | | T | 0 | 0 | 1745 | 0 | +3 | |
| RCZ | - | Mateo Naín SANABRIA Doracio | LW | ARG | 49 | 92 | 31/03/04 (21) | 83 | 1.78 | 72 | Liverpool | | 860 | | | T | 0 | 0 | 785 | 0 | Y | |
| Released |
| GST | <20 | Lewis DOBBIN | WS | ENG | 51 | 12 | 03/01/03 (22) | 93 | | | Grimsby Town | | | | | | | | 1115 | | | |
| XZT | 16 | Max LOWE | LB/LM | ENG | 56 | 2 | 11/05/97 (27) | 93 | 1.75 | 74 | Figline Valdarno | | | | | | | | 890 | | | |
| PYA | 16 | Adetayo EDUN | LWB/LM | ENG | 47 | 15 | 14/05/98 (26) | 95 | 1.77 | 63 | Peterborough Utd | | | | | | | | 195 | | | |
| PIF | 25+ | Charlie SAYERS | LB | ENG | 38 | 8 | 29/03/04 (21) | 93 | | | Merthyr Town | | | | | | | | 40 | | | |
| ZGR | 25+ | Baba RAHMAN | LWB | GHA | 59 | 9 | 02/07/94 (30) | 90 | 1.79 | 70 | PAOK | | | | | | | | 1135 | | | |
| ONG | 25+ | MATHEUS GONÇALVES Martins | St | BRA | 54 | 1 | 18/08/05 (19) | 82 | | | Flamengo | | | | | | | | 2320 | | | |
| Loan callbacks |
| FCK | - | Theo MAWENE | CB | ENG | 37 | 99 | 12/07/07 (17) | 94 | | | Morecambe | | 140 | | | | 0 | 0 | 85 | 0 | Y | |
| DUE | - | Álvaro BASTIDA Moya | DM | ESP | 51/53 | 98 | 12/05/04 (20) | 77 | 1.70 | 60 | Morecambe | | 1450 | | | | 0 | 0 | 1070 | 0 | Y | |
| UYT | <25 | Mohammed DARAMY | RW/St | DEN | 62 | 10 | 07/01/02 (23) | 88 | 1.80 | 71 | AZ | | | | | | | | 4340 | | | |
