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| Transfers |
 Barnsley < > 15,000,000 Norwich City |
| AQJ | < | Máximo PERRONE | CM | ARG | 60 | 97 | 07/01/03 (22) | 86 | 1.78 | 67 | Barnsley | | 8490 | | | | 0 | 0 | 3620 | 0 | +2 | |
| WXF | < | Gift Emmanuel ORBAN | WS | NGA | 61 | 99 | 17/07/02 (22) | 90 | | | Barnsley | | 11320 | | | | 0 | 0 | 4875 | 0 | +2 | |
 FC Midtjylland < > 3,000,000 Norwich City |
| BOY | < | PEDRO Henrique Silva dos Santos | LW | BRA | 58/59 | 2 | 05/02/06 (19) | 78 | 1.71 | 65 | FC Midtjylland | | | | | | | | 4115 | | | |
 FC Augsburg < > 3,560,000 Portsmouth |
| SSV | < | Konstantinos MAVROPANOS | CB | GRE | 63 | 4 | 11/12/97 (27) | 81 | 1.92 | 87 | FC Augsburg | | | | | | | | 2545 | | | |
 Pau < > 4,210,000 Northampton Town |
| BMG | < | Ismaïla SARR | W/St | SEN | 63 | 11 | 25/02/98 (27) | 91 | 1.80 | 70 | Pau | | | | | | | | 3745 | | | |
| Watford 2,250,000 < > Northampton Town |
| MMM | > | Ryan PORTEOUS | CB | SCO | 59 | 92 | 25/03/99 (25) | 93 | 1.85 | 68 | Northampton Town | 7.50 | 7900 | | | | 3 | 0 | 1595 | 0 | +4 | |
| Liverpool 5,000,000 < > Coventry City | Tribunal [A] |
| BWN | < | Federico DIMARCO | LWB/CB | ITA | 68 | 87 | 10/11/97 (27) | 89 | 1.75 | 75 | Coventry City | 7.00 | 32560 | | | | 1 | 0 | 5180 | 1 | | |
| FND | > | Ronald Federico ARAÚJO da Silva | CB/RB | URU | 66 | 96 | 07/03/99 (25) | 90 | 1.88 | 79 | Liverpool | 6.75 | 32360 | | | | 0 | 0 | 4390 | 0 | +2 | |
| XTT | > | BRAHIM Abdelkader Díaz | AM/RW | MAR | 64 | 94 | 03/08/99 (25) | 82 | 1.70 | 59 | Liverpool | | 20800 | | | | 1 | 0 | 4875 | 0 | +1 | |
| 135,000 < > Stevenage |
| IEY | > | Malachi HARDY | CB | ENG | 36 | 84 | 10/03/08 (16) | 94 | | | Stevenage | | 130 | | | | 0 | 0 | 75 | 0 | Y | |
| Bournemouth < > Wrexham |
| UMG | < | Alban LAFONT | Gk | FRA | 60/63 | 94 | 23/01/99 (26) | 75 | 1.93 | 80 | Wrexham | | 18180 | | | | 0 | 0 | 2985 | 0 | +4 | (t.9, Bournemouth) |
| Doncaster Rovers 4,100,000 < > Notts County |
| VML | > | Luuk DE JONG | CS | NED | 65 | 99 | 27/08/90 (34) | 90 | 1.88 | 80 | Notts County | 6.91 | 21000 | | | | 3 | 0 | 1505 | 9 | +2 | |
| WMB | > | Jérémy JACQUET | CB | FRA | 50/52 | 93 | 13/07/05 (19) | 77 | | | Notts County | | 1320 | | | | 0 | 0 | 1005 | 0 | Y | |
| Excelsior < > 2,430,000 Preston North End |
| NVD | < | Ché NUNNELY | RW | NED | 59 | 13 | 04/02/99 (26) | 91 | 1.64 | 66 | Excelsior | | | | | | | | 2210 | | | |
| Fulham 18,000,000 < > Preston North End |
| KJL | > | MURILLO Santiago Costa dos Santos | CB | BRA | 64 | 99 | 04/07/02 (22) | 88 | 1.82 | 73 | Preston North End | 6.86 | 17180 | | | | 8 | 1 | 4355 | 0 | +3 | |
| Oldham Athletic 9,000,000 < > Preston North End |
| AXV | > | Maxence LACROIX | CB | FRA | 64 | 94 | 06/04/00 (24) | 91 | 1.89 | 90 | Preston North End | 7.00 | 17280 | | | | 2 | 0 | 3490 | 2 | +3 | |
 Club Brugge 4,500,000 < > Port Vale |
| DAX | > | Joel Leandro ORDOÑEZ Guerrero | CB | ECU | 61 | 85 | 21/04/04 (20) | 92 | 1.85 | 70 | Port Vale | | 4720 | | | | 0 | 0 | 3425 | 0 | Y | |
| Sheffield United < > Swindon Town |
| YES | < | James BEADLE | Gk | ENG | 56 | 91 | 16/06/04 (20) | 95 | | | Swindon Town | 6.62 | 2310 | | | | 0 | 0 | 1790 | 0 | Y | (t.9, Sheffield United) |
| 1,250,000 < > Swindon Town |
| PTC | > | Ollie SCARLES | DM/CB | ENG | 44 | 86 | 12/12/05 (19) | 92 | | | Swindon Town | | 380 | | | | 0 | 0 | 280 | 0 | Y | |
| Grimsby Town < > 680,000 Bradford City |
| VCJ | < | Micah HAMILTON | AM/W | ENG | 48 | 13 | 13/11/03 (21) | 84 | | | Grimsby Town | | | | | | | | 675 | | | |
| Blackburn Rovers < > 150,000 Wycombe Wanderers |
| IIX | < | Teddy SHARMAN-LOWE | Gk | ENG | 39 | 92 | 30/03/03 (21) | 94 | 1.89 | 73 | Blackburn Rovers | | 360 | | | | 1 | 0 | 90 | 0 | +4 | |
| Falkirk 900,000 < > Cheltenham Town |
| PFQ | > | Finn YEATS | CM | SCO | 47 | 86 | 19/04/04 (20) | 90 | | | Cheltenham Town | | 1080 | | | | 0 | 0 | 645 | 0 | +1 | |
| Leicester City < > 1,590,000 Reading |
| BGV | < | John SWIFT | CM | ENG | 58 | 95 | 23/06/95 (29) | 92 | 1.82 | 73 | Leicester City | 6.21 | 5840 | | | | 0 | 0 | 1550 | 2 | +2 | |
 Rubin < > 3,850,000 Bolton Wanderers |
| ENG | < | Armando BROJA | CS | ALB | 61 | 8 | 10/09/01 (23) | 89 | 1.86 | 74 | Rubin | | | | | | | | 4375 | | | |
| Shrewsbury Town < > 80,000,000 Bolton Wanderers |
| AIX | < | Enzo Jeremías FERNÁNDEZ | CM | ARG | 67 | 99 | 17/01/01 (24) | 92 | 1.78 | 78 | Shrewsbury Town | 7.20 | 33160 | | | | 6 | 1 | 7895 | 2 | +3 | |
| Jahn Regensburg 2,000,000 < > Arsenal |
| YKK | > | Jonas URBIG | Gk | GER | 55 | 77 | 08/08/03 (21) | 91 | 1.89 | 74 | Arsenal | | 3960 | | | | 0 | 0 | 1445 | 0 | | |
| FK Krasnodar 4,000,000 < > Arsenal |
| KGZ | > | Sergei VOLKOV | RB | RUS | 61 | 84 | 09/09/02 (22) | 87 | 1.81 | 70 | Arsenal | | 10220 | | | | 0 | 0 | 2840 | 0 | | |
| 250,000 < > Wycombe Wanderers |
| SYR | > | Kilian LUDEWIG | RB | GER | 51 | 87 | 05/03/00 (24) | 93 | 1.75 | 66 | Wycombe Wanderers | | 2000 | | | | 0 | 0 | 480 | 0 | | |
| 300,000 < > Everton |
| YAX | < | Harrison ARMSTRONG | CM | ENG | 45 | 80 | 19/01/07 (18) | 95 | | | Everton | | 410 | | | | 0 | 0 | 575 | 0 | Y | |
| 1,130,000 < > Charlton Athletic |
| MEB | > | EOM Ji-sung | LW | KOR | 56 | 75 | 09/05/02 (22) | 91 | 1.77 | 69 | Charlton Athletic | | 4220 | | | | 0 | 0 | 2015 | 0 | +1 | |
 Príbram 2,260,000 < > Ipswich Town |
| RCM | > | Vladimír COUFAL | RB | CZE | 64 | 80 | 22/08/92 (32) | 92 | 1.79 | 76 | Ipswich Town | | 17380 | | | | 0 | 0 | 1715 | 1 | +1 | |
 Shamrock Rovers 2,165,000 < > Stockport County |
| GBB | > | Mark TRAVERS | Gk | IRL | 58 | 95 | 18/05/99 (25) | 94 | 1.91 | 82 | Stockport County | | 5520 | | | | 0 | 0 | 1605 | 0 | +1 | |
| 1,130,000 < > Stoke City |
| QIF | > | Yuki OHASHI | St | JPN | 58 | 89 | 27/07/96 (28) | 86 | 1.78 | 72 | Stoke City | | 5520 | | | | 0 | 0 | 1945 | 0 | +1 | |
| Loan/transfer listed |
| FWE | - | Iñaki WILLIAMS Arthuer | W/St | GHA | 65 | 96 | 15/06/94 (30) | 95 | 1.86 | 71 | Northampton Town | 6.98 | 21400 | | | T | 4 | 2 | 4075 | 12 | | |
| HCT | - | Adedire MEBUDE | W | SCO | 49 | 94 | 28/05/04 (20) | 85 | | | Stevenage | | 430 | | | T | 0 | 0 | 870 | 0 | Y | |
| HRC | 9 | Ruairí McCONVILLE | CB | NIR | 48 | 96 | 01/05/05 (19) | 94 | | | Stevenage | | 690 | | | T | 0 | 0 | 545 | 0 | Y | |
| VGG | - | Mohammed FUSEINI | W | GHA | 56 | 93 | 16/05/02 (22) | 94 | | | Stevenage | | 4670 | | | T | 0 | 0 | 2015 | 0 | +4 | |
| BDF | - | ROBERT RENAN Alves Barbosa | CB | BRA | 55 | 92 | 11/10/03 (21) | 88 | 1.86 | 76 | Coventry City | | 3880 | | | T | 0 | 0 | 1305 | 0 | | |
| MTQ | - | Attila SZALAI | CB | HUN | 62 | 98 | 20/01/98 (27) | 82 | 1.92 | 83 | Coventry City | | 13340 | | | T | 0 | 0 | 2200 | 0 | | |
| Released |
| LKO | 25+ | James MILNER | CM/LB | ENG | 62 | 14 | 04/01/86 (39) | 94 | 1.75 | 70 | Falkirk | | | | | | | | F/t | | | |
| LFM | 16 | Divock ORIGI | CS | BEL | 60/61 | 2 | 18/04/95 (29) | 79 | 1.85 | 75 | Milan | | | | | | | | 2835 | | | |
| BLZ | 16 | Miralem PJANIC | CM/AM | BIH | 60 | 0 | 02/04/90 (34) | 85 | 1.80 | 68 | CSKA | | | | | | | | 560 | | | |
