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| Transfers |
 Falkirk 350,000 < >  Cheltenham Town |
| TDM | > | Keelan ADAMS | RB | SCO | 46 | 97 | 13/11/01 (23) | 94 | | | Cheltenham Town | | 870 | | | | 0 | 0 | 230 | 0 | +4 | |
| Ayr United 240,000 < > Cheltenham Town |
| GLD | > | Liam RUSSELL | Gk | SCO | 41 | 76 | 11/07/05 (19) | 92 | | | Cheltenham Town | | 450 | | | | 0 | 0 | 180 | 0 | +4 | |
 Auxerre < > 1,170,000 Cheltenham Town |
| UQH | < | Diadie SAMASSÉKOU | DM | MLI | 59 | 12 | 11/01/96 (29) | 88 | 1.77 | 87 | Auxerre | | | | | | | | 1225 | | | |
| Doncaster Rovers 11,250,000 < > Swindon Town |
| LOK | > | Crysencio SUMMERVILLE | St | NED | 62 | 95 | 30/10/01 (23) | 82 | | | Swindon Town | | 12260 | | | | 0 | 0 | 5060 | 0 | +4 | |
| QYC | < | Josh DOIG | LB | SCO | 58 | 98 | 18/05/02 (22) | 86 | 1.89 | 71 | Doncaster Rovers | | 7110 | | | | 0 | 0 | 1840 | 0 | | |
 Slavia Praha 38,750,000 < > Swindon Town |
| CPG | > | Antonín KINSKÝ | Gk | CZE | 59 | 96 | 13/03/03 (21) | 89 | 1.90 | 80 | Swindon Town | | 8420 | | | | 0 | 0 | 2565 | 0 | +4 | |
| OYN | < | Kieran TRIPPIER | RWB | ENG | 66 | 12 | 19/09/90 (34) | 93 | 1.77 | 69 | Slavia Praha | | | | | | | | 1020 | | | |
| Kilmarnock < > 340,000 Northampton Town |
| JDV | < | Liam COOPER | CB | SCO | 57 | 1 | 30/08/91 (33) | 95 | 1.82 | 75 | Kilmarnock | | | | | | | | 375 | | | |
| Northampton Town < > 4,750,000 Tranmere Rovers |
| JJO | < | Ethan AMPADU | CB/DM | WAL | 60 | 84 | 14/09/00 (24) | 94 | 1.83 | 68 | Northampton Town | 6.67 | 8220 | | | | 3 | 0 | 1955 | 0 | +4 | |
 Chicago Fire < > 3,830,000 Sheffield United |
| LJJ | < | Marcus TAVERNIER | LW | ENG | 63 | 11 | 22/03/99 (25) | 93 | 1.78 | 70 | Chicago Fire | | | | | | | | 4215 | | | |
| Raith Rovers < > 230,000 Reading |
| QWD | < | Tom HOLMES | CB/RB | ENG | 50 | 2 | 12/03/00 (24) | 94 | 1.84 | 82 | Raith Rovers | | | | | | | | 405 | | | |
| 20,000 < > Reading |
| PFO | > | Jai ROWE | RWB/RM | ENG | 38 | 87 | 08/08/01 (23) | 90 | 1.81 | 76 | Reading | | 300 | | | | 0 | 0 | 10 | 0 | +4 | |
| Altrincham 90,000 < > Reading |
| XAP | > | Eddy JONES | LB/CB | WAL | 41 | 95 | 25/10/01 (23) | 93 | | | Reading | | 440 | | | | 0 | 0 | 65 | 0 | +4 | |
| Bradford City 850,000 < > Port Vale |
| XJB | > | Max JOHNSTON | RB | SCO | 50 | 98 | 24/12/03 (21) | 94 | 1.85 | 83 | Port Vale | 7.06 | 1930 | | | | 3 | 0 | 610 | 0 | +4 | |
| Blackburn Rovers < > 750,000 Bradford City |
| AFI | < | Alex LOWRY | CM | SCO | 47 | 94 | 23/06/03 (21) | 94 | | | Blackburn Rovers | 6.33 | 1090 | | | | 7 | 0 | 575 | 0 | +4 | |
| Blackburn Rovers < > 5,000,000 Bolton Wanderers |
| KDT | < | Josh FEENEY | CB | ENG | 37 | 94 | 06/05/05 (19) | 90 | | | Blackburn Rovers | | 140 | | | | 0 | 0 | 55 | 0 | Y | |
| Luton Town 70,000,000 < > Wolves |
| MKC | > | Pablo Martín Páez Gavira, GAVI | CM/LW | ESP | 65 | 85 | 05/08/04 (20) | 86 | 1.73 | 68 | Wolves | 7.06 | 23100 | | | | 2 | 0 | 8930 | 7 | +1 | |
| Bolton Wanderers < > Shrewsbury Town | Tribunal [A] |
| AIX | > | Enzo Jeremías FERNÁNDEZ | CM | ARG | 67 | 95 | 17/01/01 (24) | 91 | 1.78 | 78 | Bolton Wanderers | 7.22 | 31660 | | | | 5 | 1 | 7895 | 2 | +1 | |
| GVQ | > | ILIAS Akhomach Chakkour | RW | MAR | 60/61 | 32 | 16/04/04 (20) | 79 | 1.75 | 70 | Bolton Wanderers | | 5160 | 6 | | | 0 | 0 | 5045 | 0 | Y | |
| IMO | < | Jamal MUSIALA | AM/W | GER | 69 | 99 | 26/02/03 (21) | 91 | 1.81 | 65 | Shrewsbury Town | 6.71 | 26420 | | | | 6 | 0 | 14350 | 10 | +1 | |
| TRO | < | Ruben VAN BOMMEL | LW | NED | 62 | 95 | 03/08/04 (20) | 86 | 1.86 | 83 | Shrewsbury Town | 6.30 | 6910 | | | | 0 | 0 | 5825 | 0 | Y | |
| UYA | > | Evan FERGUSON | St | IRL | 62 | 92 | 19/10/04 (20) | 90 | | | Bolton Wanderers | | 15240 | | | | 2 | 0 | 6795 | 2 | +1 | |
| 10,500,000 < > Bolton Wanderers |
| KAW | > | Jeremy MONGA | LW | ENG | 37 | 95 | 10/07/09 (15) | 92 | | | Bolton Wanderers | | 150 | | | | 0 | 0 | 215 | 0 | Y | |
| 6,000,000 < > Shrewsbury Town |
| CEE | > | Kaden BRAITHWAITE | CB/LB | ENG | 37 | 72 | 25/03/08 (16) | 94 | | | Shrewsbury Town | | 150 | | | | 0 | 0 | 100 | 0 | Y | |
| 10,500,000 < > Leeds United |
| MCA | > | Rio NGUMOHA | LW | ENG | 36 | 97 | 29/08/08 (16) | 90 | | | Leeds United | | 120 | | | | 0 | 0 | 160 | 0 | Y | |
| 4,000,000 < > Leeds United |
| LUQ | > | Spike BRITS | Gk | ENG | 36 | 88 | 24/06/07 (17) | 84 | | | Leeds United | | 120 | | | | 0 | 0 | 75 | 0 | Y | |
 Pordenone* 2,000,000 < > QPR |
| HPX | > | Raoul BELLANOVA | RWB/RM | ITA | 64 | 87 | 17/05/00 (24) | 85 | 1.88 | 78 | QPR | | 17480 | | | | 0 | 0 | 3490 | 0 | +3 | |
| LGA | < | Victor NELSSON | CB | DEN | 62/63 | 6 | 14/10/98 (26) | 79 | 1.85 | 75 | Pordenone* | | | | | | | | 2705 | | | |
| Bristol Rovers < > QPR |
| GYR | > | Kevin DANSO | CB/DM | AUT | 64 | 92 | 19/09/98 (26) | 90 | 1.90 | 89 | QPR | 6.07 | 18680 | | | | 2 | 0 | 3125 | 0 | +3 | |
| KYE | < | Boulaye DIA | CS | SEN | 63 | 99 | 16/11/96 (28) | 82 | 1.80 | 75 | Bristol Rovers | | 15340 | | | | 0 | 0 | 4085 | 0 | | |
| Hibernian < > 2,210,000 Morecambe |
| OAK | < | Hayden HACKNEY | CM | ENG | 58 | 0 | 26/06/02 (22) | 92 | | | Hibernian | | | | | | | | 2705 | | | |
| Stevenage < > 3,000,000 Tranmere Rovers |
| OIO | < | Kieran TIERNEY | LWB | SCO | 62 | 98 | 05/06/97 (27) | 95 | 1.78 | 70 | Stevenage | 7.37 | 10960 | | | | 0 | 0 | 2200 | 4 | +4 | |
| Hibernian < > 2,310,000 Stevenage |
| PUS | < | Rabbi MATONDO | W/St | WAL | 58 | 12 | 09/09/00 (24) | 95 | 1.75 | 66 | Hibernian | | | | | | | | 2140 | | | |
 Anderlecht 650,000 < > Notts County |
| DMP | > | Tristan DEGREEF | AM | BEL | 44 | 81 | 19/01/05 (20) | 91 | | | Notts County | | 390 | | | | 0 | 0 | 400 | 0 | Y | |
| Doncaster Rovers 3,850,000 < > Preston North End |
| NYD | > | Warren BONDO | DM | FRA | 60 | 88 | 15/09/03 (21) | 84 | 1.77 | 63 | Preston North End | | 9480 | | | | 0 | 0 | 2715 | 0 | +3 | |
 Buducnost 1,475,000 < > Preston North End |
| LWW | > | Andrija BULATOVIC | DM | MNE | 52 | 97 | 27/12/06 (18) | 86 | | | Preston North End | | 1320 | | | | 0 | 0 | 1095 | 0 | Y | |
| SC Freiburg < > 5,190,000 Macclesfield FC |
| ZJO | < | Chris FÜHRICH | LW/CM | GER | 64 | 0 | 09/01/98 (27) | 90 | 1.78 | 69 | SC Freiburg | | | | | | | | 4330 | | | |
| Valladolid < > 5,310,000 Nottingham Forest |
| DWR | < | Dion Drena BELJO | CS | CRO | 61 | 12 | 01/03/02 (22) | 83 | 1.95 | 84 | Valladolid | | | | | | | | 4875 | | | |
| Juve Stabia < > 4,240,000 Nottingham Forest |
| EQT | < | Filippo TERRACCIANO | CM | ITA | 57/59 | 1 | 08/02/03 (21) | 77 | | | Juve Stabia | | | | | | | | 3455 | | | |
| Auxerre < > 950,000 Nottingham Forest |
| VWS | < | Aïman MAURER | AM | FRA | 52 | 5 | 25/09/04 (20) | 80 | | | Auxerre | | | | | | | | 1365 | | | |
| AZ 10,100,000 < > Cardiff City |
| MOS | > | FÁBIO Daniel Soares SILVA | CS | POR | 62 | 97 | 19/07/02 (22) | 92 | 1.85 | 75 | Cardiff City | | 10860 | | | | 0 | 0 | 5635 | 5 | +4 | |
| Norwich City 5,000,000 < > Barnsley |
| AWP | > | Cesare CASADEI | CM | ITA | 55 | 95 | 10/01/03 (22) | 82 | | | Barnsley | | 4450 | | | | 0 | 0 | 1740 | 0 | | |
| 350,000 < > West Ham United |
| UTT | > | Enes MAHMUTOVIC | CB/DM | LUX | 54 | 94 | 22/05/97 (27) | 85 | 1.90 | 85 | West Ham United | | 3480 | | | | 0 | 0 | 645 | 0 | | |
| 500,000 < > West Ham United |
| VMI | > | Christian BURGESS | CB | ENG | 61 | 97 | 07/10/91 (33) | 96 | 1.96 | 84 | West Ham United | | 9740 | | | | 0 | 0 | 755 | 0 | | |
| Loan/transfer listed |
| THF | - | Joshua RAE | Gk | SCO | 49 | 95 | 17/10/00 (24) | 90 | | | Bradford City | 6.93 | 480 | | | T | 0 | 0 | 445 | 0 | +2 | |
| LNI | - | Timo WERNER | St | GER | 64 | 94 | 06/03/96 (28) | 89 | 1.80 | 75 | Blackpool | | 23100 | | | T | 2 | 1 | 4730 | 1 | +1 | |
| DRY | - | RÚBEN Diogo da Silva NEVES | CM/DM | POR | 65 | 99 | 13/03/97 (27) | 89 | 1.80 | 75 | Blackpool | 6.08 | 21000 | | | T | 6 | 0 | 5000 | 3 | +1 | |
| KMO | - | Jonas HOFMANN | RW/AM | GER | 65 | 87 | 14/07/92 (32) | 91 | 1.76 | 65 | Wolves | | 29620 | 22 | | T | 3 | 0 | 2920 | 1 | +1 | |
| FQC | - | Warmed OMARI | CB | COM | 59/61 | 92 | 23/04/00 (24) | 76 | 1.85 | 76 | Shrewsbury Town | | 13660 | | | T | 0 | 0 | 2265 | 0 | +1 | |
| Released |
| OGC | <25 | Hákon Rafn VALDIMARSSON | Gk | ISL | 58 | 0 | 13/10/01 (23) | 93 | | | Angers | | | | | | | | 1915 | | | |
| RCT | 16 | JOSÉ Miguel da Rocha FONTE | CB | POR | 62 | 11 | 22/12/83 (41) | 93 | 1.90 | 83 | Casa Pia | | | | | | | | F/t | | | |
| KEL | 25+ | Gibson ADU | CS | GER | 36 | 15 | 14/02/08 (16) | 88 | | | Unterhaching | | | | | | | | 200 | | | |
| VGQ | 25+ | Tom ROTHE | LB/LM | GER | 60 | 10 | 29/10/04 (20) | 87 | 1.93 | 88 | 1.FC Union Berlin | | | | | | | | 2970 | | | |
| BTQ | 25+ | Benicio BAKER-BOAITEY | W | ENG | 41 | 0 | 10/01/04 (21) | 94 | | | Scarborough Ath. | | | | | | | | 205 | | | |
| DHW | 16 | Soumaïla COULIBALY | LB | FRA | 57/58 | 14 | 14/10/03 (21) | 78 | 1.90 | 82 | Brest | | | | | | | | 2030 | | | |
| Loan callbacks |
| OFV | - | Bright ARREY-MBI | CB | GER | 51 | 94 | 26/03/03 (21) | 82 | 1.87 | 80 | Morecambe | | 2260 | | | | 0 | 0 | 710 | 0 | | |
| SWO | - | Eliezer MAYENDA | CS | ESP | 54 | 94 | 08/05/05 (19) | 89 | | | Morecambe | | 1280 | | | | 0 | 0 | 2320 | 0 | Y | |
| TVT | <25 | Matthew COX | Gk | ENG | 46 | 82 | 02/05/03 (21) | 93 | 1.82 | 64 | Tranmere Rovers | | 860 | 5 | | | 0 | 0 | 365 | 0 | | |
| JKN | - | Jaden HESKEY | WS | ENG | 37 | 92 | 17/12/05 (19) | 93 | | | Morecambe | | 150 | | | | 0 | 0 | 165 | 0 | Y | |
