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| Transfers |
 Ipswich Town 2,000,000 < > Derby County |
| SDA | > | Leif DAVIS | LB/CB | ENG | 57 | 53 | 12/01/00 (24) | 90 | | | Derby County | | 5550 | 7 | | | 0 | 0 | 1250 | 0 | +2 | |
| Stoke City 2,000,000 < > Derby County |
| IRV | > | Harry CLARKE | RB/CB | ENG | 55 | 94 | 02/03/01 (23) | 95 | 1.78 | 71 | Derby County | 6.15 | 4160 | | | | 2 | 0 | 1050 | 0 | +2 | |
 Benfica 47,000,000 < > Norwich City |
| HBH | > | ANTÓNIO João Pereira de Albuquerque Tavares da SILVA | CB | POR | 64 | 80 | 30/10/03 (20) | 90 | 1.87 | 79 | Norwich City | | 17180 | | | | 0 | 0 | 5230 | 0 | +2 | |
| Accrington Stan. 65,000,000 < > Tottenham Hotspur |
| CAC | > | Bryan MBEUMO | W/WS | CMR | 64 | 85 | 07/08/99 (24) | 92 | 1.71 | 65 | Tottenham Hotspur | | 18080 | | | | 3 | 0 | 5145 | 1 | +2 | |
| HBU | > | Aaron HICKEY | WB | SCO | 63 | 91 | 10/06/02 (21) | 92 | 1.85 | 72 | Tottenham Hotspur | | 13840 | | | | 3 | 0 | 4165 | 2 | +2 | |
| Sheffield Weds. < > Wrexham |
| KJE | < | Iván FRESNEDA Corraliza | RB | ESP | 59 | 94 | 28/09/04 (19) | 93 | | | Wrexham | | 8430 | | | | 0 | 0 | 2795 | 0 | +5 | (t.39, Sheffield Weds.) |
| TGG | < | Jeanuël BELOCIAN | CB | FRA | 59 | 95 | 17/02/05 (19) | 88 | | | Wrexham | | 4610 | | | | 1 | 0 | 2795 | 0 | Y | (t.39, Sheffield Weds.) |
| Stevenage < > Wrexham |
| NGP | < | ASSANE DIAO Diaoune | W | ESP | 55 | 94 | 07/09/05 (18) | 84 | | | Wrexham | | 2360 | | | | 0 | 0 | 2500 | 0 | Y | (t.39, Stevenage) |
| Charlton Athletic < > FC Halifax |
| EAB | < | Lucas BERGVALL | CM | SWE | 56 | 95 | 02/02/06 (18) | 89 | | | FC Halifax | | 2200 | | | | 0 | 0 | 2885 | 0 | Y | (t.39, Charlton Athletic) |
| QMN | < | Filip BUNDGAARD | LW/WS | DEN | 55 | 97 | 03/07/04 (19) | 90 | 1.76 | 62 | FC Halifax | | 2220 | | | | 3 | 0 | 2305 | 0 | Y | (t.39, Charlton Athletic) |
| Vitória Guimarães < > 5,450,000 Hull City |
| IXY | < | RENATO Júnior Luz SANCHES | CM | POR | 63 | 11 | 18/08/97 (26) | 92 | 1.72 | 72 | Vitória Guimarães | | | | | | | | 3980 | | | |
| AIK 1,900,000 < > Shrewsbury Town |
| HWP | > | Taha AYARI | LW | SWE | 50 | 98 | 10/05/05 (18) | 88 | | | Shrewsbury Town | | 1060 | | | | 0 | 0 | 1210 | 0 | Y | |
| 500,000 < > Portsmouth |
| BVZ | > | Joel NDALA | W | ENG | 38 | 77 | 31/05/06 (17) | 90 | | | Portsmouth | | 160 | | | | 0 | 0 | 205 | 0 | Y | |
| 500,000 < > Crewe Alexandra |
| EBY | > | Kian NOBLE | CB | ENG | 37/38 | 85 | 26/02/07 (17) | 77 | | | Crewe Alexandra | | 180 | | | | 0 | 0 | 110 | 0 | Y | |
 Hertha BSC Berlin 600,000 < > Millwall |
| HWD | > | Pascal KLEMENS | CB | GER | 42 | 90 | 23/02/05 (19) | 88 | 1.86 | 80 | Millwall | | 310 | | | | 0 | 0 | 195 | 0 | Y | |
| TSG Hoffenheim 2,100,000 < > Millwall |
| TIN | > | Tom BISCHOF | CM/AM | GER | 52 | 88 | 28/06/05 (18) | 92 | 1.72 | 58 | Millwall | | 1290 | | | | 0 | 0 | 1620 | 0 | Y | |
| Newcastle United < > Accrington Stan. |
| OUM | > | OZAN Kabak | CB | TUR | 64 | 99 | 25/03/00 (24) | 91 | 1.68 | 75 | Accrington Stan. | 7.36 | 18580 | | | | 3 | 1 | 3490 | 1 | +3 | |
| DFC | < | Ianis HAGI | RW/AM | ROU | 60 | 92 | 22/10/98 (25) | 92 | 1.78 | 68 | Newcastle United | | 9260 | | | | 2 | 0 | 2720 | 0 | | |
| ONW | < | James JUSTIN | FB | ENG | 60 | 99 | 23/02/98 (26) | 96 | 1.83 | 71 | Newcastle United | | 8340 | | | | 2 | 0 | 1745 | 0 | | |
| TDO | < | Jordan ZEMURA | LB | ZIM | 61 | 79 | 14/11/99 (24) | 92 | | | Newcastle United | | 10720 | | | | 0 | 0 | 2265 | 0 | | |
| ZBN | < | Antoine SEMENYO | W | GHA | 61 | 86 | 07/01/00 (24) | 84 | 1.78 | 68 | Newcastle United | | 9740 | | | | 0 | 0 | 3330 | 0 | | |
| LGO | < | Hannibal MEJBRI | LW/AM | TUN | 58 | 99 | 21/01/03 (21) | 88 | 1.84 | 70 | Newcastle United | | 6380 | | | | 0 | 0 | 2985 | 0 | | |
 Milan < > 2,730,000 Bury |
| HFC | < | Joe GELHARDT | St | ENG | 57 | 14 | 04/05/02 (21) | 93 | 1.75 | 70 | Milan | | | | | | | | 3005 | | | |
| Forest Green 7,125,000 < > Port Vale |
| HNI | > | Kaoru MITOMA | LW/LWB | JPN | 65 | 97 | 20/05/97 (26) | 81 | 1.78 | 71 | Port Vale | 6.82 | 21200 | | | | 0 | 0 | 5315 | 0 | +4 | |
| KAI | < | Wilfried Armal ZAHA Dazet | W/WS | CIV | 63 | 99 | 10/11/92 (31) | 90 | 1.80 | 66 | Forest Green | 6.33 | 14140 | | | | 0 | 0 | 2810 | 4 | | |
| Colchester United 375,000 < > Swindon Town |
| DAP | > | Owen GOODMAN | Gk | ENG | 44 | 78 | 27/11/03 (20) | 91 | | | Swindon Town | | 410 | | | | 0 | 0 | 285 | 0 | Y | |
| 100,000 < > Cardiff City |
| CYT | > | Trevan SANUSI | LW | ENG | 38 | 97 | 25/04/07 (17) | 90 | | | Cardiff City | | 170 | | | | 0 | 0 | 205 | 0 | Y | |
| 150,000 < > Cardiff City |
| VTM | > | Alex MATOS | AM/RW | ENG | 42 | 96 | 03/10/04 (19) | 95 | | | Cardiff City | | 280 | | | | 0 | 0 | 325 | 0 | Y | |
| Hannover 96 14,000,000 < > QPR |
| FUF | > | Maximilian BEIER | St | GER | 62 | 90 | 17/10/02 (21) | 89 | 1.83 | 70 | QPR | | 10760 | | | | 0 | 0 | 6215 | 0 | +4 | |
| Released |
| IFH | 16 | David VON BALLMOOS | Gk | SUI | 58 | 13 | 30/12/94 (29) | 82 | 1.92 | 88 | Young Boys | | | | | | | | 1080 | | | |
| FTS | 16 | Karl HEIN | Gk | EST | 52 | 11 | 13/04/02 (22) | 95 | | | SV Meppen | | | | | | | | 860 | | | |
| VOZ | 16 | Ben FOSTER | Gk | ENG | 46 | 12 | 03/04/83 (41) | 95 | 1.87 | 79 | East Fife | | | | | | | | F/t | | | |
| Loan callbacks |
| QHU | - | Angel GOMES | AM | ENG | 63 | 93 | 31/08/00 (23) | 80 | 1.70 | 61 | Tottenham Hotspur | | 15040 | | | | 0 | 0 | 5015 | 0 | +3 | |
